UFO08019.5prime Sequence
1131 bp (1017 high quality bases) assembled on 2011-07-17
> UFO08019.5prime
CAGTCGACATGTTGGCCCTTGTCGTTTTTCTGATTGCCAGTTGTTTGACC
ATTCAAACGGCAGCCACTACGACACCAAGTCCAGCGGTCACCGAAGCTGG
TCACCCATCTCCTGGAGGTTCGCAAGGTCAAGAGGAGCCAGGAAACAGCT
CCTCAACGGAACTACCGGACTACTGCGATCCCTCCTTGTGCCACAAAGAA
CTCAAACATGTGGCTTGCAACGCATCAATCGAACTGCACGACAAGTGCTC
TCTGGACGCTGAGCTCATAGTGATAAGCCCAAAGGTGGAAAGATTCCTAT
TAAGGCGATTTAATGAGTTGAGGGATAGCGTGGCCAAAGGAGGGTTCAAC
GGACTGAGTCCTGCCAGTCGGATGGGCACCTTGAAGTGGAACCCGGAACT
GGCCTACCTAGCTGAATTCAATGTGAGGGATTGTGTCCTGAGGCACGACG
AGTGCCGGAACACGAAGTTCACGCAAAACGCTGGCCAGACGGTTGGGTAT
CGAGGCATTAAAGGAAAATTGCCAGAGTTGGAGGATATCCTTAGGGATAT
CATAGGGGTGTGGTTGCGGGAAAAATCCAGAACTTCGATGGTGAACATCA
TGAAGTATGTCGAGCAGGAATCTCAGTCGCCGAAGTACAACTTTTTACAG
ATCGTGCTGGAGAACGCTGAATCCGTGGGCTGTGCCATCGTTCAGCAGTC
CCGGCATGGCTGGATTCAGACGTTTTTCGCGTGCAACTATGGCCACGCCC
CGGTTGTGGGCTCGCCCGTCTACGAGCCCGGGAAAAAGGCGGCGGAGTCC
TGCAAGACCGGAGCGAACCCGAAATATGCACATCTCTGCGCCGAGTCCGA
GGTCTACGAGAAGTTACGCCGAAAGCAGAAACGCGTCCAGTCCCGAAATT
AAAACTAGAACTCTTGGAAAACGGGACTTCGTCATGCTCAACGGCGAAAC
GCTGATGGAACGCCGCCAGCTGAAGTTGGGCACAGCACAGCAGCCGATGG
AGCAGCAGCAGCGCCTGCCGCCGAAGGAGGGGCAGCTGCACCTGGAGGAA
GCTGCAGCCACTCCAGCAGTCGACGGGAGCACCGCCAAGAGCCACTCCAG
GAGTCACCCGGGTGGGAGGGAAAGGCTTCAT
UFO08019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42564-RA | 1587 | CG42564-RA | 5..1127 | 9..1127 | 5305 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6376383..6376876 | 626..1115 | 2010 | 97 | Plus |
| 3R | 32079331 | 3R | 6375020..6375416 | 231..627 | 1985 | 100 | Plus |
| 3R | 32079331 | 3R | 6374479..6374701 | 9..231 | 1115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:07 has no hits.
UFO08019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:51 Download gff for
UFO08019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 3..1130 | 7..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:34 Download gff for
UFO08019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 3..1130 | 7..1131 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:04 Download gff for
UFO08019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42564-RA | 3..1130 | 7..1131 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:04 Download gff for
UFO08019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6374479..6374700 | 9..230 | 100 | -> | Plus |
| 3R | 6375020..6375414 | 231..625 | 100 | -> | Plus |
| 3R | 6376383..6376891 | 626..1131 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:34 Download gff for
UFO08019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2200201..2200422 | 9..230 | 100 | -> | Plus |
| arm_3R | 2200742..2201136 | 231..625 | 100 | -> | Plus |
| arm_3R | 2202105..2202613 | 626..1131 | 96 | | Plus |
