UFO08020.5prime Sequence
1110 bp (1005 high quality bases) assembled on 2011-07-17
> UFO08020.5prime
CAGTCGACATGGCAACCGCTTGCAATCGACTGACATGGTCGCTGGTAGTG
GTGGTGGCGGTGATGGCGGTCATGTGCTCATCCGCGGAGGCTGCCGACAA
GGAGGGCTTTCCCGTGGCCATAATCCACATAAATGATTTGCACGCCAGGT
TCGAGGCCACGGACACCTCCGGTGGCACCTGCGACGAGGGCGAGGAGTGC
ATCGGTGGCTATCCGCGCACCGTTTACACCGTGAAGCGTCTGCTTCAGGA
GCAAGCGGAGCTCAATCCCATCTACATCAATGCCGGCGACAGTTTTCAGG
GCACGTTGTGGTACAACATCGGTCGATGGAACGTTACGCAGCAGCTGCTG
AACCTTCTGCCCGCCGATGTGATGACCCTCGGCAATCACGAGTTCGATCA
CGGTGTGGAGGGCGTGGTGCCATTCCTAGAGACGGTGGACACCAATATGC
TGGTGGCCAACATGGACTGCGCCCACGAGCCCACCATGGAGGGCAAGTAC
AACAAGTCGATGATAATCGAGCGATCGGGCCGCAAGATTGGTGTGATTGG
TGTTATCCTGGAGACAACCTACGATCTGGCCAATACCGGTAAGGTGATCT
TTCGCAACGAGAGCGACACCATTCGCGAGGAGGCGCAGCTGCTGAAGGCC
CAGGGTGCCAACATCATCATTGTCGTCTCCCACTGCGGCTACGATGTGGA
TCAGCAGATCGCTGCGAATGCCGGCGATTGGATCGACGTCATCGTTGGCT
CCCATTCGCACACCTTCCTCTACACGGGTGATCCGCCTGGGCCACACACG
CCATCCGGTGATTATCCCACCGAGGTTATCCACAGCTCTGGGCCACCGCG
TGCTCATTGTCCAGGCATCGGCCTATGCCCGCTACGTGGCAACCTGATCG
TCTATTTCGATGACACGGCGATGTGCTGGACTACGAGGGTGATCCGCTCT
ACATGACCATCCGTGCCAGAAGATGATATCGTTCTACAGCCATGTGCCTT
GCACTCGAGATGAAACCATGCCGAGCGGACGTGGGCAAAGTCCGGTGAAT
CTCAAGCGAGTCAGTGCAGCATGTGGGGATGCAATCTGTAACTCCTCACG
AAGCATCGGC
UFO08020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42249-RD | 1827 | CG42249-RD | 81..1172 | 9..1088 | 5010 | 98.2 | Plus |
| CG42249-RC | 1818 | CG42249-RC | 72..1163 | 9..1088 | 5010 | 98.2 | Plus |
| CG42249-RB | 1820 | CG42249-RB | 72..1042 | 9..976 | 4735 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11104375..11104758 | 573..955 | 1775 | 99.2 | Plus |
| X | 23542271 | X | 11103826..11104054 | 146..374 | 1145 | 100 | Plus |
| X | 23542271 | X | 11104112..11104311 | 374..573 | 1000 | 100 | Plus |
| X | 23542271 | X | 11103476..11103617 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:11 has no hits.
UFO08020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:52 Download gff for
UFO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1173 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:36 Download gff for
UFO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1173 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:06 Download gff for
UFO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42249-RC | 65..1173 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:06 Download gff for
UFO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11103829..11104054 | 149..374 | 100 | -> | Plus |
| X | 11104113..11104310 | 375..572 | 100 | -> | Plus |
| X | 11103469..11103615 | 1..148 | 97 | -> | Plus |
| X | 11104375..11104777 | 573..972 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:36 Download gff for
UFO08020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10997862..10998087 | 149..374 | 100 | -> | Plus |
| arm_X | 10997502..10997648 | 1..148 | 97 | -> | Plus |
| arm_X | 10998146..10998343 | 375..572 | 100 | -> | Plus |
| arm_X | 10998408..10998810 | 573..972 | 98 | -> | Plus |
