UFO08022.5prime Sequence
1165 bp (1034 high quality bases) assembled on 2011-07-17
> UFO08022.5prime
CAGTCGACATGATGAACAGCCTAAAGAAATTGCCCGTGCGCATGCTGGCT
AACGCTGCACGTCAGCAAAGTGCTGCGATGTCCTCGGCAACTGGTCTCCC
CCCACCCCTCACCTTTCTCACCGACGATGAGAAAATGATGAAGGAGACTG
TTGCCAAACTGGCTCAGGAGCAGATCCAGCCCTTGGTGAAGAAAATGGAC
TTTGAGCACAAATTCGATCCCTCCGTGGTGAAGGCGGTTTTCGAGAACGG
CCTGATGGGCATTGAGATCGACACCGAGCTGGGAGGCAGTGGCTGCAACT
TCATGACCAACATCGTCGTGGTGGAGGAGCTGTCCAAAATCGATCCTGCC
GTCGCCGCTTTTGTGGACATTCACAACACACTGGTCAACTCGCTGATGAT
CAAGTTCGGCAATGCCGAGCAGAAGGCGAAGTATCTGCCTAAGCTGGCCC
AGGAGTACGCCGGTAGCTTCGCCCTGACCGAACCCGGTGCAGGATCCGAT
GCCTTCTCCCTGAAGACCGTCGCCAAGAAGGACGGCTCCCACTACGTAAT
CAACGGCTCCAAGATGTGGATCTCCAACTCTGATGTGGCGGGAGTCTTCC
TGATCTTTGCCAATGCCAAGCCAGAGGATGGCTACCGTGGCATTACCACC
TTCATTGTGGACCGTGAGACTCCCGGTCTGATCGTGAACAAGCCGGAGGA
CAAGCTGGGCATCCGTGCCTCTGGAACCTGCCAGCTCACCTTCGACAACG
TGCGTGTGCCCGAGGAGAACATCCTGGGAACCTTCGGCCATGGCTACAAG
TATGCCGCCGGCTTCCTGAACGAGGGTCGCATCGGTATTGCTGCCCAGAT
GGTGGGCCTGGCCCAAGGAACCTTCGACGCGACCATTCCGTACCTGCTGG
AGCGCAAGCAGTTCGGTGATGCCATCTATAACCTTCAGTCGATGCAGCAT
CAGATCGCCACCGTGGCCACGGAGATCGAGGCGCCCGCCTGATGACCTAC
AATGCTGCACGTCTGCAAGAGCAGGGTGTGCCCTTCCAGATGGAGCCGGC
CATGGTCAAGTACTACGCCCTCCGAGGGTGGCCAGAGGGCGGCGATCAAG
TGCCTCGAACTGGGAATGGAAGCTGGCTTCCCCCTGGAATTTCGCCAGGA
AGATCATACCCGGTG
UFO08022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3902-RA | 1585 | CG3902-RA | 119..1218 | 9..1108 | 5305 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18894355..18894835 | 630..150 | 2405 | 100 | Minus |
| 3L | 28110227 | 3L | 18893487..18893965 | 1108..630 | 2150 | 97.5 | Minus |
| 3L | 28110227 | 3L | 18897944..18898050 | 150..44 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:44 has no hits.
UFO08022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:47 Download gff for
UFO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 108..1226 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:21 Download gff for
UFO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 111..1229 | 1..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:53 Download gff for
UFO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3902-RA | 111..1229 | 1..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:53 Download gff for
UFO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18893476..18893965 | 630..1122 | 96 | <- | Minus |
| 3L | 18894356..18894834 | 151..629 | 100 | <- | Minus |
| 3L | 18897944..18898049 | 45..150 | 100 | <- | Minus |
| 3L | 18898140..18898183 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:21 Download gff for
UFO08022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18886576..18887065 | 630..1122 | 96 | <- | Minus |
| arm_3L | 18887456..18887934 | 151..629 | 100 | <- | Minus |
| arm_3L | 18891044..18891149 | 45..150 | 100 | <- | Minus |
| arm_3L | 18891240..18891283 | 1..44 | 93 | | Minus |
