UFO08023.5prime Sequence
1168 bp (1052 high quality bases) assembled on 2011-07-17
> UFO08023.5prime
CAGTCGACATGGCCAACCGTATGAGAGGAGGAGCCTGCTGTCCTTCAAGA
TGTCAGCCCGCCTGTCCACCATGTCCGCCACCTGGTCCGCCCTGCGATGC
ACCTCTGGTGCGACTGGATAAACTGTGGCCGGAGCCCTACAATCCTTGCT
CCTTCAAGAATTGCCTGATCTTTGGCGGTCACGATGAGCCCTATATTCGA
CCCTTTGATCCTAAGGGTTGTACACGAATGCGTCGCAATGATATCGACCG
ATCGTTGGGCTATCCCATAGGCGTAGTGTCTGGTACGACTGTTGTAAAGT
CGGGCATTCCGAATCAGGAGAGCGTCCGGTTTGCTTCAAATCTTAAGGCA
TTTGCTCATTCCTATTACACGCGGCGCGATGAATGGAAACCGGATACGAT
CGATATGGTGGTGAACGAGGGTCAGGTTTTGTTTAACGATTCCGAGAACA
TGGACCCTCCGAATGCATCAGACTCGCCGGATATCTACGATGAAAATGAG
CAAAAGGTGACGCGCCACTTTAAGATCAACGATATCGAGTTTGCCATGGA
GTTGGAGGCGCCCTTTGAGGTCTATGGCTACGAAAACGTCATACGCAATC
TACGCAGAATCTTAAGAGCCTTCTTCAAAAAGGCCAAATACGGTGTGTTC
TTCACACCCAATTGGTATCTGCTGATTTGGAAAGAGAAGGGTGTTTGGAT
GGTACTCGATTTGAATGGCAGGGACAAAAACACGATGAAACCGAACAATG
AAGAGGGGTATCCCCTATTGTTAGGCCTCAAGTCCTTCGATAATGTTGTT
TGGTTGATTAAAAAGGAGAGCTATCTTGATAAGAACGCTAAGTTTTCAAT
TAGAGAAATCCTCGTTGTTCGTTTGGCCACCCCTGGAAGTACTGGTCAAA
GTTGGGAGCGAGACATGGCATGCGAATGAGCCAGTTCGATGTGATTGCCT
CCGATTATGCGTATGTCAAGTCAAATCTTCATCTCACCCTAACTCGAGGA
TGCGCTAAGGAATCGTAATGCTCTACTGGGGGCGGGGCACCTGCATTGGC
ATCGAAGAATCGATCATCCAGCCACTTGGTACAAGGAAAAATGTAACGAT
AGGTCATGTGTCTTTTGGGCGTTATATTGTGCCAATGCCTGACTGTATGG
AATCCAGTAACCGAAGTG
UFO08023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4669-RA | 2101 | CG4669-RA | 145..1247 | 9..1110 | 5215 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5234770..5235758 | 104..1089 | 4580 | 98.7 | Plus |
| 3L | 28110227 | 3L | 5234627..5234721 | 9..103 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:47 has no hits.
UFO08023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:48 Download gff for
UFO08023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 143..1241 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:24 Download gff for
UFO08023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 139..1237 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:54 Download gff for
UFO08023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4669-RA | 139..1237 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:54 Download gff for
UFO08023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5234621..5234721 | 1..103 | 96 | -> | Plus |
| 3L | 5234770..5235748 | 104..1079 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:24 Download gff for
UFO08023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5227721..5227821 | 1..103 | 96 | -> | Plus |
| arm_3L | 5227870..5228848 | 104..1079 | 98 | -> | Plus |
