UFO08025.5prime Sequence
1116 bp (1008 high quality bases) assembled on 2011-07-17
> UFO08025.5prime
CAGTCGACATGAAAACTCTTTTGGTTCTTCGGATATCAACTGTCATACTT
GTTGTGCTGGTTATTCAAAAATCATATGCAGACATTCTCGAATGCGATTA
TTTCGACACTGTCGATATTTCGGCAGCTCAAAAACTACAGAATGGATCGT
ACTTATTTGAGGGGTTGCTCGTTCCGGCCATTTTGACGGGAGAATATGAC
TTTAGGATTCTCCCGGACGACTCGAAGCAGAAGGTGGCTCGTCACATAAG
AGGATGTGTGTGCAAGCTGAAGCCCTGTGTCAGATTTTGCTGCCCTCACG
ACCATATCATGGATAATGGTGTCTGCTACGACAACATGTCCGACGAGGAG
CTGGCTGAACTCGATCCCTTCCTTAATGTGACTCTTGACGACGGGTCGGT
GTCCCGCAGACACTTTAAAAACGAACTAATCGTCCAGTGGGACCTACCGA
TGCCGTGTGACGGAATGTTCTACCTAGACAACCGCGAAGAACAGGATAAG
TACACGTTGTTCGAGAACGGAACTTTCTTTCGCCACTTTGACCGTGTGAC
TCTTCGCAAGCGGGAATACTGCCTTCAGCATCTTACATTCGCAGATGGTA
ATGCTACGTCTATTCGAATTGCACCTCACAACTGTTTGATAGTGCCATCA
ATTACCGGTCAGACGGTTGTGATGATCTCTTCGCTGATATGCATGGTTCT
AACGATCGCCGTATACCTCTTCGTCAAGAAACTACAAAACTTGCATGGAA
AATGCTTCATCTGCTACATGGTGTGTCTCTTTATGGGATATCTTTTCCTA
TTGCTCGATTTGTGGCAGATATCCATTAGCTTTTGCAAACCAGCAGTTTT
CTGGGTTACTTCTTTGTCATGGCCGCATTTTTTTGGCTTTCCGTCATCAG
TCTGCACCTTTGGACACGTTCAGAGGCTCCTCCCACAAAGCGAATCGCTT
CTTATTTGAGCATCGGTTTCTGGCTACATACCTATGCTGGGGCATGCGTG
TCCTGACAGATACGTTCTGCGATACATCGTGAACAGATGATCCTCGTGTG
GCCACGAGGGAACCTGTGAATATATAACTCAAGCTGGTCAGCATTTCTAA
CTGTAACGGTACCAAT
UFO08025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mth-RE | 2420 | CG6936-RE | 601..1709 | 9..1092 | 4880 | 97.3 | Plus |
| mth-RB | 1882 | CG6936-RB | 148..1256 | 9..1092 | 4880 | 97.3 | Plus |
| mth-RA | 1967 | CG6936-RA | 148..1256 | 9..1092 | 4880 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 345375..345881 | 515..9 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 344923..345100 | 846..669 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 345158..345317 | 669..510 | 785 | 99.4 | Minus |
| 3L | 28110227 | 3L | 344740..344869 | 974..846 | 600 | 99.2 | Minus |
| 3L | 28110227 | 3L | 5605116..5605406 | 225..515 | 330 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:31 has no hits.
UFO08025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:56 Download gff for
UFO08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RC | 46..1019 | 1..974 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:46 Download gff for
UFO08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RA | 143..1115 | 1..974 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:15 Download gff for
UFO08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mth-RA | 143..1115 | 1..974 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:15 Download gff for
UFO08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 344923..345099 | 670..846 | 100 | <- | Minus |
| 3L | 345158..345311 | 516..669 | 100 | <- | Minus |
| 3L | 344740..344869 | 847..974 | 98 | <- | Minus |
| 3L | 345375..345888 | 1..515 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:46 Download gff for
UFO08025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 344923..345099 | 670..846 | 100 | <- | Minus |
| arm_3L | 345158..345311 | 516..669 | 100 | <- | Minus |
| arm_3L | 344740..344869 | 847..974 | 98 | <- | Minus |
| arm_3L | 345375..345888 | 1..515 | 99 | | Minus |
