UFO08027.5prime Sequence
1143 bp (1027 high quality bases) assembled on 2011-07-17
> UFO08027.5prime
CAGTCGACATGGCATTTGTCAGCAATGCAATTGTTGGCCCGGAGAATTGC
AAATCGGTAACGCCACCCATTCCGTATCCCAAGTCTGTGGCCTTCATCAT
CAGCAATGAGTTCTGCGAGCGATTCAACTACTATGGCATGCGCACCATCC
TGGTGCTGTACCTCACCAACAAACTGGGCTACAATGAGGAGACGGCAACC
GTACTTTTTCACACGTTCACCATGCTGGTCTACATCTTTCCCCTGATCGG
AGCTCTTATCGCCGATGGCTGGCTGGGAAAGTACAAGACGATATTATATC
TATCGCTGGTGTATAGCCTAGGGGCTATGGTGGTATCCTTTGGTGCCGTT
CCGCTATCGGGGATGCCAACTAAAGCTGTGACCGTTGTGGGACTCCTACT
AATTGCGATCGGGACCGGTGGAATCAAGCCATGCGTTTCCGCCTTTGGTG
GCGACCAGTTCTCGCTGCCCGCGCAAAGTTTTCAGCTGGCAAAGTTCTTC
TCGTTGTTTTACTTTGCCATTAACGCAGGATCTTTGATTTCGACCACGTT
CACCCCGATCTTGAGGGCAGACGTCCATTGTTTTGGCGATCAGGATTGCT
TCTCGCTGGCCTTTGGCGTGCCCGCCATCTTGATGATCTTCTCGGTGATA
ATCTTCATGGCCGGCAAGCGGTTGTATAGGTGTCAGCCACCTGCTGGCAA
CATGATCTTCGGGGTGTCGCGTTGCATTGCGGATGCGTTCAAGGGATGGC
AAAAGCGCAGCACTCGGAGCCGATGGAGAGCTTTCTGGACTATGCCAAGC
CGACGGTGGGGTCGCGAATGGTGCAGGAGACCAAGTGCCTGGGCAGAATC
CTACGACTCTTTCTGCCCTTCCCGTCTTCTGGCCCTCTTTGACCAGCAAG
GCTCGCGATGGACCTTCCAGGCCACACGAATGGACGGCAACGTGTTGGTT
TTCAGATAGCCCGATCAGATGCAGTAGTCATCCCTGCTCATCTTCGGGTT
TCTGCACTATTCGACTATATCATTTACCTGCTCTGCACGTTGTGGATAAG
GCACCCTGCGAAGCTCACTTTAAGCCTTCTCTCGGCAGCTAGATTTTCCC
TCTCACGGCTGAATGAATGAACAGCTGCTACGACCACACTCAT
UFO08027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yin-RC | 2565 | CG44402-RC | 153..1268 | 9..1105 | 5005 | 97.7 | Plus |
| yin-RB | 2574 | CG44402-RB | 153..1277 | 9..1105 | 4905 | 96.9 | Plus |
| yin-RD | 2670 | CG44402-RD | 308..1373 | 59..1105 | 4755 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3864349..3865013 | 1028..374 | 2850 | 98 | Minus |
| X | 23542271 | X | 3865070..3865298 | 373..145 | 1145 | 100 | Minus |
| X | 23542271 | X | 3865358..3865440 | 144..62 | 415 | 100 | Minus |
| X | 23542271 | X | 3866512..3866565 | 62..9 | 270 | 100 | Minus |
| X | 23542271 | X | 3877180..3877251 | 868..938 | 190 | 87.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:35 has no hits.
UFO08027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:56 Download gff for
UFO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1232 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:49 Download gff for
UFO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1232 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:17 Download gff for
UFO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 144..1232 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:17 Download gff for
UFO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3864282..3865013 | 374..1088 | 96 | <- | Minus |
| X | 3865070..3865298 | 145..373 | 100 | <- | Minus |
| X | 3865358..3865439 | 63..144 | 100 | <- | Minus |
| X | 3866512..3866571 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:49 Download gff for
UFO08027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3758315..3759046 | 374..1088 | 96 | <- | Minus |
| arm_X | 3759103..3759331 | 145..373 | 100 | <- | Minus |
| arm_X | 3759391..3759472 | 63..144 | 100 | <- | Minus |
| arm_X | 3760545..3760604 | 1..62 | 93 | | Minus |
