UFO08028.5prime Sequence
1118 bp (1015 high quality bases) assembled on 2011-07-17
> UFO08028.5prime
CAGTCGACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGAGCACGACA
GGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTAACTTTCGT
CATTCCCAAGGACTCCGAGTGCCACGATGTCTACACTTCGCTGCTGAAAC
TCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACTACCAGCCG
AACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTTAAACTGGA
GGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGACGCTGTGCT
CCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTCAGATTTAC
GTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCGCGATTCCG
CTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAACAAGGCTT
CCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCCGCTGTCTG
GAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCCAACACGGA
CTACATGTATGTGGTGGACACGCGACCGCGGATTAATGCCATGGCAAACA
GAGCCGCCGGCAAGGGATACGAGAACGAGGCCTTCTACGAGAACATCAAA
TTCCACTTCCTCGGCATTGAGAACATCCACGTCCAGCGTGCCAGTCTGCA
AAAGGTGCTTGAGGCCTGCGAACAGAAGTCGCCCACGATGAGCGCCTTCA
TAAATGCCCTGGAGTCATCCGGCTGGCTGAAGCACATTCGCTCCATATTG
GACACGTCGAGCTTCATCGCCAACGCCGTGGACAGGGCGTCTCGGTGGTG
GTCCACTGCTCCGACGGCTGGGACCGCACGGCCCAGGTCTGTTCACTGGC
GCAGCTGATGCTGACCCCTACTACCGACCATCAGGGCTTCCAGGCGCTAA
TCGAGAAGACTGGCTGGCATTCGGGCACAAGTTCAGCGAGCGCTGCGGTC
ACATCAGACGGATGCCGCCGAGGGGGTCGCCGATCTCACACAGTTCCTGG
ACTGTACCTGGCAGCTATGTCCCAACGCACGGGCCTCAGTTTCACGGAGC
GATCTGTATCTGACGGAC
UFO08028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RC | 3193 | CG3530-RC | 760..1839 | 7..1079 | 5105 | 98.7 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 630..1709 | 7..1079 | 5105 | 98.7 | Plus |
| CG3530-RB | 2810 | CG3530-RB | 377..1456 | 7..1079 | 5105 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23391389..23391674 | 447..162 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23390895..23391125 | 811..581 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 23390556..23390819 | 1067..810 | 880 | 95.8 | Minus |
| 2R | 25286936 | 2R | 23391741..23391896 | 162..7 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 23391192..23391328 | 581..445 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:39 has no hits.
UFO08028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:57 Download gff for
UFO08028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RC | 738..1830 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:52 Download gff for
UFO08028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 373..1465 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:20 Download gff for
UFO08028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 373..1465 | 1..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:20 Download gff for
UFO08028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23391741..23391900 | 1..162 | 98 | | Minus |
| 2R | 23390534..23390817 | 812..1086 | 94 | <- | Minus |
| 2R | 23390895..23391124 | 582..811 | 100 | <- | Minus |
| 2R | 23391192..23391326 | 447..581 | 100 | <- | Minus |
| 2R | 23391390..23391673 | 163..446 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:52 Download gff for
UFO08028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19278057..19278340 | 812..1086 | 94 | <- | Minus |
| arm_2R | 19278418..19278647 | 582..811 | 100 | <- | Minus |
| arm_2R | 19278715..19278849 | 447..581 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 163..446 | 100 | <- | Minus |
| arm_2R | 19279264..19279423 | 1..162 | 98 | | Minus |
