UFO08030.5prime Sequence
1096 bp (1005 high quality bases) assembled on 2011-07-17
> UFO08030.5prime
CAGTCGACATGGATAAGTTGTCGATCGAACAGAAGATTTTCATCCGTCGC
TCGGACGGTAGAGTCCACTTGGCGGAGATTATCAAACTGGAGGGCGGTGA
CTCCAAGCTGATTACGGTGGAGTGGCCCGAAGGACATACGGTGCGTGGTA
AGGAACTGCCCCTGGAGCTGGTGGTCCTGATGAATCCTCATATCTTCGAC
TCGCCCCGCTGCAGTGGCGGCAATGCGGCGTCAGCCAATCAAACTGCCTC
CATATCGCCACGTTCAATGAAACAACGAATAGCGACTGGGAGCTTATCTC
CTGTACTGGCCACTGCCCCGCCACGCCAGCAGACGGCGCCGCCAGTTCGA
GAGGACGAGGTGGTGCACCAGGCTGAAAGAATGCGAAAAGAACGGGAACG
GAGGCGAGAAGCACAAGCCAGGACTCGTCTAGATCGGGAGCAGGGGAAGA
ACGAAGATCCGGGAAATCCCAACTGGGAAGTAGCCAGAATGATACGACTG
CAACGCGAGCAAATGGAGAGTCAGCGGGTGAGAAGTGGTACTACGAACGA
ACGAATCAATTGCCACCAAATTATGGTTTGTGTGAGGAAGAGACCACTGA
GGCGCAAGGAGCTGGCTGACCGGGAACAGGATGTGGTCAGCATTCCGTCT
AAGCACACATTGGTGGTCCACGAGCCCCGCAAGCATGTGAACCTGGTCAA
GTTCCTGGAAAATCATAGCTTCCGTTTCGATTACGTCTTCGACGAGGAGT
GCTCCAATGCCACGGTCTACGAATTCACAGCCCGACCCTTGATAAAGCAC
ATTTTTGATGGCGGAATGGCCACGTGTTTCGCCTACGGACAAACTGGAAG
CGGCAAGACCTATACGATGGGTGGTCAGTTCCCCGGAAGGCATCAGAGCT
CAATGGATGGCATCTATGCATGGCGCTAAGACGTGTTCTCACTCTAAAGA
CGTCCCTATACAGCTTAATCTGAAAGTTACTGCAGCTCTCGAGATCTACG
GCACCCGGTGTCGATCTCCTGATGCTGCAGCCACACTGGCTTCTGAGAAA
GAAACAGACAGGTGCATGTGGCCTCACCGATCATACAGAACCCGCC
UFO08030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp59C-RA | 2120 | CG3219-RA | 135..1165 | 8..1025 | 4840 | 98.7 | Plus |
| Klp59D-RA | 2499 | CG12192-RA | 995..1150 | 698..853 | 270 | 79.7 | Plus |
| Klp10A-RF | 4467 | CG1453-RF | 1394..1576 | 698..880 | 240 | 76.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23124897..23125908 | 1008..8 | 4590 | 98.5 | Minus |
| 2R | 25286936 | 2R | 23142993..23143148 | 698..853 | 270 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:43 has no hits.
UFO08030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:58 Download gff for
UFO08030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp59C-RA | 131..1182 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:54 Download gff for
UFO08030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp59C-RA | 131..1182 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:22 Download gff for
UFO08030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp59C-RA | 131..1182 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:22 Download gff for
UFO08030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23124861..23125912 | 1..1038 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:54 Download gff for
UFO08030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19012384..19013435 | 1..1038 | 98 | | Minus |
