UFO08031.5prime Sequence
1146 bp (1015 high quality bases) assembled on 2011-07-17
> UFO08031.5prime
CAGTCGACATGGCGGACCTAATACATTTGGGAAACATTGATGTTGTCATC
CAGAAAGATAAGCCCGGATCGCCAACGGGCTGTTCGGATGATGGGAATCT
TGCGGGGCTGGGTGGCATGACCGGATTGGGTGGCATAATGGCACCTGGCG
GCATCGACTTGGGTGACTTGGCTCAGGAATTGGATCACGATGAATTCGAT
GGACCACATATGCTGAATGGTGAACGTCCAGCGATTATTGCTCCTCCGGA
AAGCGAATGGTACCATGGACGACTCGATCGCTACTCTGCAGAGTCTCGCC
TACGCGGAAGCAGTAAACTGGGCAGCTATTTAGTTCGCGAAAGTGACCGC
AAACCTGGCTCCTATGTTCTGAGTTATTATGGCCGCACCGGCATAAATCA
TTTTCGGATTACAGCTGTGTGCGGAGACTTCTATATCGGAGGACGACAAT
TCATTTCCTTAAGCGACTTGGTTGGTTACTATACCTCATGTAGTGATCTA
CTGAAACGCGAACGCTTGGCCATACCAGTTGCTCCGCCGGAGCCAGTTAA
TGATAAGAAACGCGTCGTAGCCATCCTGCCTTACACAAAAATGCCAGAGA
CCGATGAACTGAGTTTCCAGAAAGGTGATATCTTTTTTGTACACAATGAC
ATGGGCGATGGCTGGTTGTGGGTGACTGCCCATCGTACGGGCGAGCAGGG
AATGATATTCAGAGAACTTGTTGACGATCTGGATGTATCTATCGATCCAA
ATACGGTGTTTCCCTGGTTCCATCCCAACTGCACCAAAAACGAAGCCGTC
GATATGTTGGTTAAAGCTGGACCAGGAAGTTTCCTCGTTCGCCCAAGTGA
CAACTCACCGGGGGATTACTCTCTATTCTTTCATATAAACAATCAAATCC
AACGCTTTCGTATTGAAAAGAAAGCGTGCGCTATTTAATGGGGCGGTCGT
ACATTCGATGCTTGGATGCGGTTATAAATCGATATCGCAAAGAGCCAATG
TGGAGGCCACTCACTGACATCAGGTTGTCATGCATTCAGCCCGAGTCCAT
CAGCATATGTTTGTGAAAAGCGCTGAAGATCTTACGCCACCATGGCCGAG
TGTTGACCATCGTCTCAAAGGATCAGATCACTCGCATAGACGAGTC
UFO08031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vap-RF | 3845 | CG9209-RF | 772..1851 | 9..1077 | 4995 | 98.2 | Plus |
| vap-RE | 4340 | CG9209-RE | 990..2069 | 9..1077 | 4995 | 98.2 | Plus |
| vap-RC | 3543 | CG9209-RC | 470..1549 | 9..1077 | 4995 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16002886..16003296 | 816..406 | 2055 | 100 | Minus |
| X | 23542271 | X | 16003713..16003925 | 221..9 | 1065 | 100 | Minus |
| X | 23542271 | X | 16002529..16002714 | 999..815 | 770 | 97.9 | Minus |
| X | 23542271 | X | 16003529..16003643 | 333..219 | 575 | 100 | Minus |
| X | 23542271 | X | 16003376..16003451 | 407..332 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:48 has no hits.
UFO08031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:58 Download gff for
UFO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RB | 385..1455 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:57 Download gff for
UFO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..1540 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:23 Download gff for
UFO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vap-RC | 470..1540 | 9..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:23 Download gff for
UFO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16002476..16002712 | 817..1046 | 94 | <- | Minus |
| X | 16002886..16003295 | 407..816 | 100 | <- | Minus |
| X | 16003377..16003449 | 334..406 | 100 | <- | Minus |
| X | 16003529..16003642 | 220..333 | 100 | <- | Minus |
| X | 16003715..16003925 | 9..219 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:57 Download gff for
UFO08031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15896509..15896745 | 817..1046 | 94 | <- | Minus |
| arm_X | 15896919..15897328 | 407..816 | 100 | <- | Minus |
| arm_X | 15897410..15897482 | 334..406 | 100 | <- | Minus |
| arm_X | 15897562..15897675 | 220..333 | 100 | <- | Minus |
| arm_X | 15897748..15897958 | 9..219 | 100 | | Minus |
