UFO08033.5prime Sequence
1156 bp (1052 high quality bases) assembled on 2011-07-17
> UFO08033.5prime
CAGTCGACATGCGCTGCCTGGCATTGAGCGCAGTGTTTTTGTGCCTGACT
CTGGCCGGGCACTTTCATTTGTCAGATGCCTACAAGAACGAGGTACAGAT
CACCCCGGATCCGCTAGACGCGGTGGAGACGACAACCAAGAAGTCCAGCT
GGTTTGGTGGATTCAAGAAGTTCTTTGGCAGCGATGGCACTACAACTACC
ACCAGCACGATTGCTCCACCGGTGGTCACCAGTCCGAAATCGGTGGTGGT
TACACCCACGGCAGCCAACAAGCCACCGCCACTGGTCATCTCGCATGCTC
CATTGATGCCGCTGGGACCGCGACCCGATACGCCGGGATCGTCACCTTTC
GGCGCATCCCAAAATCCTCAAACGCCACCTCAGTGGCCATCGAGCACCAG
AGCAACGCCATCGCATCCATCGCAACCCTCGCAGCCATCTCAGCAGCCAC
CTCTGCCTGGTTTCGCCTCCTATCGGCCACAGAAACCGCAGCCGAATAGC
TACGATCTTAGCTACGGTGGCGGTCCACAACCGGCACCAGCAGGAACAGG
ACGTCCTGGTTTTGGACTGGGCATAAGCAGCACTACGAGCACCACGACCA
CCGCGAAGCCCATCACCAGCACCACAGGTAAGACACCGCAGCAGAAGGAG
GATTTCCCGGCACTGCCAGGACCTCGGCGGCCGTCCCAAAAAGAGGACTT
CCCAGCTCTGCCCGCGCCCAAAACTCCACCAGGCTCGCCAACGCCTACAC
CGGGATCTCCTTCGGCTTGGCAATCACCGTTGCCAACGCCCCAGCATCCT
GTGCATCCGCCCACTAAGGCTACTTCGGCGGCCACGCCTACCCCGACACC
AACGCCTTCGTTCTCTTCCTCGGTAACGCCCACTCCCGCTCACGGATCGT
CTGTGGGACCACACAAGACGGAGGTGGAGGTGGTGGAGGCGGCACAACTA
CTGTGCGACCCGGTTCCAGTCGTCGGGCAACTCGGTTGCCACTGATGACG
AAATCCGCCCAGCTGACGGAGCTACTGTCACCCAAGGAGAGCACCAGCCA
GATCGTACCATCAAGTGAATCTTGCAGGACGCCAGCGTCATCGAAGGCGC
AGAATGACGCACCAATCCGTTTGACTGTGGACTCGAAGCCCTTGAATCCC
CCGACA
UFO08033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2145-RB | 1988 | CG2145-RB | 123..1273 | 9..1151 | 5260 | 97.8 | Plus |
| CG2145-RA | 2045 | CG2145-RA | 180..1330 | 9..1151 | 5260 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10927710..10928692 | 74..1055 | 4695 | 99.2 | Plus |
| X | 23542271 | X | 10927578..10927644 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:56 has no hits.
UFO08033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:00 Download gff for
UFO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1227 | 1..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:01 Download gff for
UFO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1227 | 1..1055 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:27 Download gff for
UFO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2145-RA | 172..1227 | 1..1055 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:27 Download gff for
UFO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10927570..10927644 | 1..75 | 94 | -> | Plus |
| X | 10927712..10928692 | 76..1055 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:01 Download gff for
UFO08033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10821603..10821677 | 1..75 | 94 | -> | Plus |
| arm_X | 10821745..10822725 | 76..1055 | 99 | == | Plus |
