UFO08034.5prime Sequence
1126 bp (1016 high quality bases) assembled on 2011-07-17
> UFO08034.5prime
CAGTCGACATGCTGCGCGTTTTGAAGACCGGTGCCCTGCTGCGTTCCCAG
GCCAAGAACTTCGCAGCAGCTGTTGCGAACTACTCCTCCCTCCCGCAGCC
ACAGACAACGCCCGATATCCTCTACACCGGGGTATTTATCAACAACGAGT
GGCACAAGAGCAAGTCGGGCAAAATATTTGAAACCATCAACCCGACCACA
GCGGAAGTCATTGCCGAAATTCAGTGTGCTGATAAGGAAGATATCGATAT
TGCCGTCCAGGCTGCACGCAATGCATTCAAGTTGGGATCTCCATGGCGTC
GCATGGATGCCTCGGAGCGGGGTCGCCTGCTCTACCGCCTGGCTGATCTC
ATGGAACGCGATCAGGTCTATCTTGCCAGTCTGGAGACCCTTGACAACGG
CAAGCCCTACAGCATGTCCTACAACGTGGATCTCCCGACTGCCATCAAGA
ACCTGCGCTACTTTGCTGGATGGGCGGACAAGAACCATGGCAAGACTATT
CCCATGGACGGAGATTTCTTCACTTACACCCGCCATGAACCCGTGGGCGT
GTGCGGCCAGATCATTCCCTGGAACTTCCCCATCCTGATGATGGCCTGGA
AACTGGGTCCCGCTTTGGCTACCGGCAACACCATTGTACTAAAGCCCGCT
GAGCAGACCAGTTTGACTGCTCTGTACATTGCCCAGTTGGTGAAGGAGGC
TGGCTTCCCCGAAGGTGTGGTCAATGTGGTTCCCGGATTTGGAACTGCTG
GCGCTGCCTTGGCGAACCACTGCGATGTGGATAAGGTGGCCTTCACCGGT
TCCACCGATGTGGGCAAACTTATCCAACTAGCATCGGGAAATACTAACCT
AAAGAGAGTGACACTGGAGTTGGGAGGCAAGTCGCCAAACATTATTCTGT
CTGACACCGATATGGACTACGCCGTCGAGACGGCTCACTTTGGTCTGTTC
TTTACATGGGCCAGTGCTGCTGTGCAGGATCTCGTACTTTCGTGAGACAG
ATCTACGATGAGTTGTCGAGGCGCAGCGCGACGGCTAAGAAGCGCACCGT
GGCATCCTTTGATCTGAACCTGGAGCAAGGTCCTCAAGGGACGAGGAGCA
AATTGAAAGATCCTGGAATGTATCAA
UFO08034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aldh-RB | 1900 | CG3752-RB | 210..1339 | 9..1126 | 5155 | 98.1 | Plus |
| Aldh-RA | 2070 | CG3752-RA | 380..1509 | 9..1126 | 5155 | 98.1 | Plus |
| CG31075-RB | 1764 | CG31075-RB | 631..845 | 528..742 | 295 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9390246..9390987 | 378..1108 | 3050 | 96 | Plus |
| 2L | 23513712 | 2L | 9389828..9389979 | 131..282 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 9387768..9387893 | 9..134 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 9390040..9390136 | 281..377 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 26986606..26986820 | 742..528 | 295 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:19 has no hits.
UFO08034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:53 Download gff for
UFO08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 371..1490 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:39 Download gff for
UFO08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 371..1490 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:09 Download gff for
UFO08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aldh-RA | 371..1490 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:09 Download gff for
UFO08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9389829..9389977 | 132..280 | 100 | -> | Plus |
| 2L | 9390040..9390136 | 281..377 | 100 | -> | Plus |
| 2L | 9387759..9387890 | 1..131 | 96 | -> | Plus |
| 2L | 9390246..9390987 | 378..1108 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:39 Download gff for
UFO08034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9390040..9390136 | 281..377 | 100 | -> | Plus |
| arm_2L | 9387759..9387890 | 1..131 | 96 | -> | Plus |
| arm_2L | 9389829..9389977 | 132..280 | 100 | -> | Plus |
| arm_2L | 9390246..9390987 | 378..1108 | 97 | | Plus |
