UFO08035.5prime Sequence
1159 bp (1061 high quality bases) assembled on 2011-07-17
> UFO08035.5prime
CAGTCGACATGAAAAAAGAACTGTCCGGAAATAGCTCAGCCCGCTGGCCA
CAGATGTTCGGTGGGAATTCCAGAGAAGCAGGCATGTGGCAGCGCATACT
TTTGCTCGGCTGCATGTGGAGTGCATTTTTCATGTGCCGCAGCCGGGGGC
AACAAATCAACATTGGCGCCTTCTTCTACGACGATGAGCTGGAGCTGGAG
AAAGAGTTCATGACGGTGGTCAATGCCATCAATGGACCTGAATCGGAACA
GACGATGCGTTTCTATCCGCTCATAAAGCGCCTGAAGCCCGAGGATGGGA
GTGTCACAATGCAGGAACATGCCTGCGATCTCATAGATAATGGTGTCGCG
GCTATTTTCGGACCAAGTTCAAAGGCGGCGAGCGACATTGTGGCCTTGGT
GTGCAATAGTACCGGCATTCCGCACATAGAGTTCGACATATCGGACGAGG
GCATTCAGGCCGAGAAGCCCAACCACCAAATGACCCTTAACCTCTACCCG
GCCCAGGCCATATTGTCCAAGGCCTACGCGGATATTGTACAAAACTTTGG
GTGGCGCAAGTTCACCATTGTCTACGATGCGGACGATGCCAGGGCAGCAG
CTCGACTGCAGGATCTTCTGCAGCTGCGAGAGGTTCACAATGATGTGGTG
CGGGTGCGAAAGTTCCACAAGGATGACGACTTCCGGGTCATGTGGAAGAG
CATACGGGGCGAGCGGCGAGTGGTTTTGGACTGTGAGCCCAACATGCTGG
TGGAGCTTCTGAATTCCTCCACTGAGTTCGGTCTGACTGGACAGTACAAT
CATATATTCCTGACGAACCTGGAAACCTACACCGATCATCTGGAGGAACT
AGCGGCGGATAACGAAACATTTGCCGTGAACATAACTGCTGCTCGTCTTT
TGGTCAATCCCGATCCTCCGCCGTACTCCCTACCTTACGGATATGTCACC
CAAAGGGACAACATCGTTTACGAAAGCAGCGATCCGCCTCGCACCCTCAT
CACGACTTGATACATGATGCACTGCAGCTTTTTGGGCCAGTCTTGGCGCA
ATGCCAGCCTTCCTCTACCCGAAAGGATGGTGGGTGCCGCGAAATACTGC
ACTTTGCCGCATCCGGAGGTGCCACTCCCATGGGCGTATCTGCACCGCCT
CATGAAAGG
UFO08035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluRIIC-RD | 3004 | CG4226-RD | 37..1194 | 8..1159 | 5335 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 915057..915269 | 588..800 | 1065 | 100 | Plus |
| 2L | 23513712 | 2L | 914799..915003 | 384..588 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 914122..914280 | 8..166 | 795 | 100 | Plus |
| 2L | 23513712 | 2L | 914337..914493 | 165..321 | 785 | 100 | Plus |
| 2L | 23513712 | 2L | 915325..915447 | 801..923 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 915503..915705 | 919..1120 | 575 | 93.2 | Plus |
| 2L | 23513712 | 2L | 914552..914615 | 321..384 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:23 has no hits.
UFO08035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:54 Download gff for
UFO08035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RC | 29..1190 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:41 Download gff for
UFO08035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RD | 33..1194 | 1..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:11 Download gff for
UFO08035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluRIIC-RD | 33..1194 | 1..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:11 Download gff for
UFO08035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 914118..914279 | 1..165 | 98 | -> | Plus |
| 2L | 914338..914493 | 166..321 | 100 | -> | Plus |
| 2L | 914553..914615 | 322..384 | 100 | -> | Plus |
| 2L | 914800..915003 | 385..588 | 100 | -> | Plus |
| 2L | 915058..915269 | 589..800 | 100 | -> | Plus |
| 2L | 915325..915447 | 801..923 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:41 Download gff for
UFO08035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 914118..914279 | 1..165 | 98 | -> | Plus |
| arm_2L | 914338..914493 | 166..321 | 100 | -> | Plus |
| arm_2L | 914553..914615 | 322..384 | 100 | -> | Plus |
| arm_2L | 914800..915003 | 385..588 | 100 | -> | Plus |
| arm_2L | 915058..915269 | 589..800 | 100 | -> | Plus |
| arm_2L | 915325..915447 | 801..923 | 100 | -> | Plus |
