UFO08036.5prime Sequence
1094 bp (1003 high quality bases) assembled on 2011-07-17
> UFO08036.5prime
CAGTCGACATGGGACCAATATGCCGCATCCTGGGCTGCTCCTTTCTGCTG
CTCATCGCCGGATTAGTGCCGCACCATGCCTCCAGAGTCGTCGGATTGGA
ATCAACTTGCAGCCAGGAACAATTCCGCTGCGGCAACGGAAAGTGCATTC
CGCGAAGATGGGTCTGCGATCGGGAAAACGACTGCGCCGATGGAAGCGAT
GAATCGACGTCCCAGTGCCGGGGCCTGTGTTCCTCCTTGATGTTCATGTG
TAAAAATGGTGAGCAGTGTATACACCGGGAATTCATGTGCGATGGCGACC
AGGACTGTCGCGACGGATCCGACGAATTGGAATGTGGCAATAGGACATGT
CGCTCCGACGAGTTCACCTGCGGCAATGGACGTTGCATTCAGAATCGCTT
CAAGTGCGACGATGACGACGATTGTGGTGACGGATCGGATGAGAAGAACT
GCGGGGAAAAGGCGAAATGCGGATCCAATTTCTTCGCTTGCAAAAGTGGA
CCGTGCATTCCCAATCAATGGGTTTGCGATGGAGATTCAGACTGCAGAAA
TGGCGAAGATGAAATGCAAAACTGCACCGTCAGTCTATTGAACTTCTGCC
AAGCGGGTGAGTTCCAGTGCTCGGATAGAATCACCTGCCTGCACAAATCG
TGGGTTTGCGATGGCGAGGCCGATTGTCCCGATGGCGAGGACGAATCGCA
GTCCAACTGCCTAAAAGTGTCCTGTCGTCCGGATCAGTTCCAATGCAACG
ATCAAAGCTGCATCGCTGGCCATCTGACCTGCAACGGGAAGAGGGACTGT
GCGGATGGCAGTGATGAAATTATGTGCGACATTAGTGCGACGCCAAGGAC
TTGCAATGCAACCACTGAATTCGATTGCGGCGGTGGTCTGTGCATCCGAA
TGCCAGGTCTGCAACCGCAGAAAGAATTGCCCGAATGGCGAGGATGAACC
GGCCGGAAAGTGGTGGCATCAACGAGTGCCTCCTCCGAAGAATGCCGCTG
TATGCCACCATTGGGTGATCTGGAGGTGGATTACCGCTGCCAGTGCACGA
TGCTAGACTGGGCGCCGATTCAAACACATGTGGGACTTCGATGA
UFO08036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LpR2-RF | 4145 | CG31092-RF | 300..1392 | 7..1094 | 4975 | 97.7 | Plus |
| LpR2-RB | 3476 | CG31092-RB | 233..1325 | 7..1094 | 4975 | 97.7 | Plus |
| LpR2-RG | 4186 | CG31092-RG | 930..1930 | 99..1094 | 4515 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25707734..25708214 | 1046..566 | 1910 | 95.9 | Minus |
| 3R | 32079331 | 3R | 25709291..25709517 | 566..340 | 1135 | 100 | Minus |
| 3R | 32079331 | 3R | 25713841..25713962 | 220..99 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 25713537..25713656 | 339..220 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 25718398..25718490 | 99..7 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 25747127..25747229 | 446..344 | 260 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:28 has no hits.
UFO08036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:40:55 Download gff for
UFO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RF | 205..1302 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:43 Download gff for
UFO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RB | 227..1324 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:13 Download gff for
UFO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LpR2-RB | 227..1324 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:13 Download gff for
UFO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25707682..25708213 | 567..1093 | 95 | <- | Minus |
| 3R | 25709291..25709517 | 340..566 | 100 | <- | Minus |
| 3R | 25713537..25713656 | 220..339 | 100 | <- | Minus |
| 3R | 25713842..25713961 | 100..219 | 100 | <- | Minus |
| 3R | 25718398..25718492 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:43 Download gff for
UFO08036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21533404..21533935 | 567..1093 | 95 | <- | Minus |
| arm_3R | 21535013..21535239 | 340..566 | 100 | <- | Minus |
| arm_3R | 21539259..21539378 | 220..339 | 100 | <- | Minus |
| arm_3R | 21539564..21539683 | 100..219 | 100 | <- | Minus |
| arm_3R | 21544120..21544214 | 1..99 | 95 | | Minus |
