UFO08039.5prime Sequence
1136 bp (1014 high quality bases) assembled on 2011-07-17
> UFO08039.5prime
CAGTCGACATGTGCAGCCGGAAATGCTTCCGCATGCCCACCCTGGTCATC
TGCGGCGTCGTACTGACCATTATCCTGGTCTGCATCACGGGCATCACGCT
GACGAACAGCATCAACATATCGAATATCGTGAAGCTGCGCGAGAAGGTGG
CCAGCGATTCGGCGGCGGCCAATGGGGGTCACCAGGCGGCCCAGACGCGG
GCGGCTCTCGTTGAGCAGCAGTACTCCACGCTGCAGCAGCATCATCTTTC
CCGCAGCGATCTCAACTATATTCAGGCGGCGACACATCCGAAGAATCTAC
AGCGCCAACTGCAGCAGCAGCAGCAGCAACAGTTGCAACAGCAGCAACCG
AATAAGATTGTCATCGAAATTGGTCTGAGCAATGACAGCGGACCAAGCAG
TGCGCCCGCAAGCAGTACACTTGGTTCAAGCAGTACCGGTCCGCGTATTC
TTCAGGCGGCCGAGGCTTTGATGGAGGGTAATGTGGATTCGATTTCATTG
CCAGCAGCAGCGCCGCTAACAGCAGCTACTACAAGTTCAGCTAAAAGCTT
AGAAAACAGCCAAGGGAGCGATACGCCGCATAGCCATGCAAATACTACCA
ATGCAGATATTACAATGGGCATCGCCGATCACAATCCAGGGGGCATTCAG
TTCGAGCGACGCGCCCACGTTAAACAGATGATGGAACATGCGTGGCACAA
TTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTTTCGCAGC
GACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGCTACAATC
GTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAGGATATCGC
GAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACATATCAGCGCA
GAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCGGCATGCTGAC
GCTGTACGCCTTTACGGCGATCCACTGTACAAGGAGAGCCCAGCACGTTG
CCGACAGCTGCTGCCGCTCAAACACAACGGGTATTCCCTAGCGCTGTCAC
ACCAGGACGGGTGGTGCCAGAACTACGGCTGGCATCGCGGGCAGTTCATC
TATCCGAATGGCACTGCATCTGATTGCTAATCCTTG
UFO08039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RI | 4102 | CG42275-RI | 546..1683 | 8..1122 | 5065 | 97.5 | Plus |
| alpha-Man-I-RO | 3808 | CG42275-RO | 916..1389 | 672..1122 | 1730 | 93.7 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 961..1434 | 672..1122 | 1730 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10307893..10308562 | 677..8 | 3350 | 100 | Minus |
| X | 23542271 | X | 10278858..10279193 | 1006..676 | 1465 | 98.5 | Minus |
Blast to na_te.dros performed 2014-11-27 00:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2502 | 214..365 | 196 | 63.2 | Plus |
UFO08039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:03 Download gff for
UFO08039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 537..1656 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:12 Download gff for
UFO08039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 537..1656 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:34 Download gff for
UFO08039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RI | 537..1656 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:34 Download gff for
UFO08039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10278751..10279191 | 678..1100 | 94 | <- | Minus |
| X | 10307893..10308567 | 1..677 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:12 Download gff for
UFO08039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10172784..10173224 | 678..1100 | 94 | <- | Minus |
| arm_X | 10201926..10202600 | 1..677 | 99 | | Minus |
