UFO08040.5prime Sequence
1144 bp (1043 high quality bases) assembled on 2011-07-17
> UFO08040.5prime
CAGTCGACATGCATTTCTGGATTGACAAGCGCTCACAGCAGTGCGGATTT
GGACGGTCTCGCGTGGCGGCCTCCTTGTCGCACGCTGGCAGCGGTCTCAG
CTATGGCCATCCGCCACGAAGGACCAAGTCCACCAGCTGCAGCAACAGCA
CTGGACAGTCAATGCCACCGGTGCATCGATCTCTGCCGCAGACGCCGTAC
GATATGCATCAGCCCGGCACCAGTCGCCAGTCGCAGTCGTCATATGGCAA
CAACAATTCCCTGCATGCCCAGCAGCAGCAACATTCCAGCAGCGGTGGAA
CCAGCAATAACAATAACTTGACTGCCACCGGCACAACAACAACTGCCAGC
AACAATAACCATGCCAGCGGAATAGCCTCATCGGCAGCAGTCCTCACCGG
AAGCGGAACCATTGTTCCGCTGGTGGCACGAGGATCGCACTACAATCACC
ACGGCAACACGCGTTATCAGCCAAGGACGCAGCAGCAACTGTTGCAACAG
CAGCAGCAACAGCCACACCAGCACCAACAGCAGCAACATCAGCAGCATCA
GCAGCAGCAGCACTACAGCTACCACCATCCGCAATTCGGCAACATGGCTG
TGCCCATGAGACACTACGATGCACATCAGCAACAGCAACAGCAGCAATAC
TCGGGCAACGTCTACGCTGACGATGCCTACAGCGCCTATCACCACACCGC
CCATCACCAGCACAGCAGCAATCACTCGACCAGCGGCAGCAACAACCAGC
GTCAAGCGTCCGCCTACGCCACGCCACGTCGCCACAATTCCAGCAGCAAC
ATGCGACACTCGACGCCAGCAGCAGCGGCAACCACAACCACAGAGACACC
AAGTGTCGCCAGTCCAGCGGCAGCAGTGGCTGCTGCACCTGCCACAATGC
ATAGCAGCCACTTGCAGCAGCACCATCATGCACTGCTGCAGCACGCGGAC
TCGCAACTGTTGCCCAGCCATTTGAAGTGCGCATGTGCGCCTTCGCTGGT
GCTGCCTCCGTTTTCGTGCAGAACAAAGTTCTACTTCGACCACCAGGGCA
CTGGGCTGGAAGTGCTGATCTTTCTGCACCTTTTCGACTTCTTTTTGCCG
CCTGTCTTTGAAATCAGCCTGGACCGCATTCGAAGGCCTCTTCT
UFO08040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10713-RA | 2534 | CG10713-RA | 510..1652 | 4..1144 | 5330 | 98.3 | Plus |
| rn-RG | 5014 | CG42277-RG | 2968..3055 | 494..584 | 190 | 82.6 | Plus |
| rn-RE | 5014 | CG42277-RE | 2968..3055 | 494..584 | 190 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13430279..13430942 | 667..4 | 3305 | 99.8 | Minus |
| 3L | 28110227 | 3L | 13429779..13430199 | 1086..668 | 1805 | 97.9 | Minus |
| 3R | 32079331 | 3R | 7275212..7275298 | 584..498 | 195 | 81.6 | Minus |
Blast to na_te.dros performed 2014-11-27 00:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..7197 | 465..943 | 445 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6654..7110 | 472..943 | 278 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2973 | 271..648 | 261 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..7210 | 270..747 | 237 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..3002 | 109..855 | 232 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2683 | 547..928 | 207 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2667 | 537..898 | 198 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1591 | 702..767 | 137 | 73.1 | Plus |
UFO08040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:03 Download gff for
UFO08040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1652 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:14 Download gff for
UFO08040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1652 | 1..1144 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:36 Download gff for
UFO08040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10713-RA | 508..1652 | 1..1144 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:36 Download gff for
UFO08040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13429721..13430199 | 668..1144 | 96 | <- | Minus |
| 3L | 13430279..13430944 | 1..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:14 Download gff for
UFO08040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13422821..13423299 | 668..1144 | 96 | <- | Minus |
| arm_3L | 13423379..13424044 | 1..667 | 99 | | Minus |
