UFO08043.5prime Sequence
970 bp (868 high quality bases) assembled on 2011-07-17
> UFO08043.5prime
CAGTCGACATGACCATATCGGATTCGGAACTCGACAGCAGCAAGGGCATC
GACCTGACATTCAGGAGGAGAAGGAAGGCAGGTTCCGTCGCCTGCGAAGG
ATTTATCACCACGTACCATGAATACTGCAGGAACACTTCCATACATGGTG
TCCAATATCTTGGCGAGCAGGAGCGCCCCTTCCGCGAGCGCATCTTTTGG
CTGTTCGTGTTCCTGATCTCGATCTACGGCTGCTCCACGCTGATTCAAAG
TGCCTACACCAAGTGGACCGAAACGCCTGTGATCGTTAGCTTCGCGGAAA
AATCGACCCCCGTGTGGAACATCCCGTTTCCGGCGGTCACAGTTTGCTCG
GAGACCAAAAGGGTGCTAAAGCAGAAAGGAAAAGAGACCACTTATGCTGA
TCTTTACAGCCAGTTCAGCGAAGATATGCGAGCTTCGCGGGTGTTTAGGC
CCGAAAACGTTAGTGCCCTTGAGATGGAGGAGTTCCGCACCCTGCTGCAC
GTATGCAACACGCAGATCATTGAAGAGGACATACCCTTGATAGCCGGCGA
TGACTTGGACTACTTTGATGTTCTGCAGCGGATGCTGCCCCAGTTTGATC
GGTACTTCTTTTACTGCCGCTGGCTTAGTCGTTTCGGCGAGTGCGAGACC
TTCTTCCGAAAGACTCTTACGGAGGAGGGCATCTGCTATACGTTCAATGG
GCTGAGAGCCACTGAGATATACCGGGACGACACCTATCAGTATCAACACC
GCGGGGAGCCCCTGGAAATGGAAATATTAGCTCGCAACATACGGCCTGGA
CTCTGGAAACGGGCTATGCCTGGACCGCGATGTGGAGACCTTTTCCGCTC
GTGTCTAAAGTGCGGAACGCGTCCTGGCTTTTCTGGCCCTCCAAGCTTTA
AGCAGGAGCTGGACTACCCTGTCGAGAAACTGGTAGGGATTTAGGTCTGC
TTCTAGCGCCGAAGACGTCC
UFO08043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpk-RA | 2518 | CG1058-RA | 83..1056 | 8..970 | 4355 | 97.2 | Plus |
| rpk-RB | 2536 | CG1058-RB | 83..1026 | 8..943 | 4325 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4646744..4647290 | 377..917 | 2290 | 96.7 | Plus |
| 3R | 32079331 | 3R | 4646063..4646330 | 8..275 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 4646575..4646679 | 275..379 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:22 has no hits.
UFO08043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:04 Download gff for
UFO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 126..1076 | 1..943 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:15 Download gff for
UFO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 76..1026 | 1..943 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:37 Download gff for
UFO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpk-RA | 76..1026 | 1..943 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:37 Download gff for
UFO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4646056..4646330 | 1..275 | 98 | -> | Plus |
| 3R | 4646576..4646678 | 276..378 | 100 | -> | Plus |
| 3R | 4646746..4647315 | 379..940 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:15 Download gff for
UFO08043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 471778..472052 | 1..275 | 98 | -> | Plus |
| arm_3R | 472298..472400 | 276..378 | 100 | -> | Plus |
| arm_3R | 472468..473037 | 379..940 | 96 | -> | Plus |
