UFO08044.5prime Sequence
1121 bp (1004 high quality bases) assembled on 2011-07-17
> UFO08044.5prime
CAGTCGACATGAGTTTCCATAAGAGCGACTCGCGGACGCCGCTGGCGCCC
ACCGAGTACACTAAAATCCCGACGGTCACTGCGGGCTACGGAGAAAACGA
GAAGCCCAAAGGCGGCAAAGGCGGGCAATCCAAGTTCATACGTTCGGACA
TGGCCGACGTCCCCGTGCAGCAGGCGGCAGGATCGACGCTTCCGTTGGTA
ATCTCTCGGAAAAAAGGTGACGACTCCGAGGATGGCAACTACAATCCGTT
CGAGCACCGCAAGGTGGAGCATCCGACATCGGATCTCGAGACATTTGTAC
ACTTGCTAAAGGGATCGCTTGGCTCCGGAATATTGGCCATGCCAATGGCC
TTCTCCCACGCTGGATTGTGGTTCGGTTTGGTGGCCACCTTCGCGGTGGG
CACCTTGTGCACCTACTGCGTTCACATCCTGGTCAAATGCGCCCACATCC
TATGCCGACGTCGCAAAATCCCGATGATGGGATTCGCCGATGTGGCGGAA
CAGGCTTTCCTCGACGGACCACCTGCCCTGAATCGCTGGTCACGCTTCAT
CCGGTTCATGGTCAATACGTTTCTGGTTATCGATTTGCTGGGCTGCTGCT
GCATCTATCTGGTTTTCGTGGCCACCAATGTGGAGCAGGTCGTGCGGGTG
TATATGGAAACGGAGCTGAGCATTAGAGTTTGGATCATGATCGTGACGGC
ACCGCTGATCTTTATGTGCCTGGTACGCAACCTGAAGTTCCTCACGCCCT
TCTCGATGATAGCCAACATCCTGATGTTCGTGGGCATCGTGATCACCTTC
ATCTATATGTTCTCCGATATTCCTGCACCCGTGGAACGTCCTGCATTTGT
GAGTGTAACCGAATGGCCATTGTTCTTCGGCACCGTGATCTTTGCTCTGG
AGGGCATCGGTGTAGTATGTCCCTGGAGAACGACATGAAGAACCCCAGCA
CTCATCGGTGCCCATCTGTCTGAACTTCGCATGGGTCTGTGATTGCCTCT
ACACCTTATTGAATCTTGCCTCTGAAGTACGGCCGAAACCAGGCAGCATA
AGCTGATCTGCCTGAAGATATTGCAATCGTCAGTGATGAATGCCATCGCA
CTCTGTACCTTACCTGCATTC
UFO08044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43693-RB | 2399 | CG43693-RB | 268..1340 | 9..1062 | 4685 | 96.8 | Plus |
CG43693-RA | 2541 | CG43693-RA | 410..1482 | 9..1062 | 4685 | 96.8 | Plus |
CG43693-RE | 2227 | CG43693-RE | 147..1168 | 60..1062 | 4430 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11037765..11038434 | 949..281 | 3180 | 98.7 | Minus |
3L | 28110227 | 3L | 11039617..11039764 | 281..134 | 710 | 98.6 | Minus |
3L | 28110227 | 3L | 11039996..11040068 | 135..63 | 365 | 100 | Minus |
3L | 28110227 | 3L | 11046178..11046231 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:26 has no hits.
UFO08044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:05 Download gff for
UFO08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6327-RB | 259..1323 | 1..1049 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:18 Download gff for
UFO08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43693-RA | 403..1467 | 1..1049 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:40 Download gff for
UFO08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43693-RA | 403..1467 | 1..1049 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:40 Download gff for
UFO08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11037649..11038434 | 281..1049 | 96 | <- | Minus |
3L | 11039618..11039764 | 134..280 | 98 | <- | Minus |
3L | 11039998..11040068 | 63..133 | 100 | <- | Minus |
3L | 11046178..11046238 | 1..62 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:18 Download gff for
UFO08044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11030749..11031534 | 281..1049 | 96 | <- | Minus |
arm_3L | 11032718..11032864 | 134..280 | 98 | <- | Minus |
arm_3L | 11033098..11033168 | 63..133 | 100 | <- | Minus |
arm_3L | 11039278..11039338 | 1..62 | 95 | | Minus |