Clone UFO08045 Report

Search the DGRC for UFO08045

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:80
Well:45
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptvtd-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO08045.5prime Sequence

1156 bp (1050 high quality bases) assembled on 2011-07-17

> UFO08045.5prime
CAGTCGACATGTTCTATGAGCACATTATTTTGGCCAAGAAAGGCCCCCTA
GCCAGGATCTGGTTGGCAGCACATTGGGACAAAAAAATTACAAAGGCCCA
TGTATTTGAAACTAATATTGAAAAATCAGTGGAAGGGATTTTGCAACCAA
AAGTAAAATTAGCGTTGAGAACGTCTGGACATTTATTGCTAGGTGTTGTT
CGCATTTATTCCAGAAAAGCGAAGTATTTATTAGCTGATTGCAATGAAGC
CTTTGTCAAGATTAAGATGGCTTTTCGACCAGGCATGGTCGACTTACCAG
AAGGGCACAGAGAAGCTAATGTTAATGCAATAACACTCCCAGAAGTTTTT
CATGACTTTGATACAGCCCTGCCCGAATTAAACGATATTGATATTGAGGC
TCAGTTTTCTATAAATCAGTCCAGAGCTGACGAGATAACAATGAGAGAAG
ATTACGGTAGTTTGTCTCTTTCCTTACAAGATGACGGATTTGGTGATATA
GGCTTTGAAGCAGAAACGCCTGAAATTATACGATGCTCTATACCTTCAAA
TATTAATGATAAAATATTTGATAATGACGTTTTGGAAAATATTGAGTCTC
TGGATCCACATTCATTGGACGCCCATGCTGATATGCCTGGTTCTCGATTG
GATGGTGATGGGTTTGGAGATTCTTTTGGACAACCAGCCCTTTTTGAAGA
CGATCTTTTTGGTGATCCTTCTCAACCAGTTGAGCAGATTACAAAAGAAT
CTACTACTGTTCTCAACGCAGATGATTCTGATGAAGACGCCATTGATAAT
ATTCATAATGTCCCTTCGCCTGCAACCTCGCTCGTTAATTCGATTGAAGA
TGAGAAAGAGGAAAATAATTTAATGGACATGCAAGTGTGTCCGAAAATGT
GCCAATGAATGAAATAACGCTTGTTCAAAACGAGGATGAGGGATTTGCGT
TAGCTCCTTTAGATGTCTCAATGTATAAAGGCGTTACAAAGCCAACGCAA
AAGAAAACTTATTATTGACGAATAAAAAAATATTTTCTGGAAGAGGAAAT
GAAGCCTCAGTAGCGACCATCTGATTATATTACTACACCTTGAACTAGCC
CACCACCAAAGATTATGTATGGAGGACCTGGAGGTCCAACTTTTTCATAC
CACTCG

UFO08045.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
vtd-RB 2527 CG17436-RB 88..1193 9..1110 5145 98.3 Plus
vtd-RA 2299 CG17436-RA 88..1193 9..1110 5145 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 27136944..27137237 265..558 1470 100 Plus
3L 28110227 3L 27136612..27136869 9..266 1290 100 Plus
3L 28110227 3L 27146395..27146574 682..861 900 100 Plus
3L 28110227 3L 27146627..27146828 861..1061 730 95.1 Plus
3L 28110227 3L 27140119..27140242 558..681 620 100 Plus
Blast to na_te.dros performed 2014-11-27 00:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 4232..4326 650..554 127 64.3 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 422..467 999..1049 115 80.4 Plus

UFO08045.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:05 Download gff for UFO08045.5prime
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 94..1170 9..1082 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:20 Download gff for UFO08045.5prime
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 88..1164 9..1082 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:42 Download gff for UFO08045.5prime
Subject Subject Range Query Range Percent Splice Strand
vtd-RA 88..1164 9..1082 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:42 Download gff for UFO08045.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 27146395..27146574 682..861 100 -> Plus
3L 27146628..27146851 862..1082 94   Plus
3L 27136612..27136869 9..266 100 -> Plus
3L 27136946..27137236 267..557 100 -> Plus
3L 27140119..27140242 558..681 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:20 Download gff for UFO08045.5prime
Subject Subject Range Query Range Percent Splice Strand
3LHet 2253759..2253938 682..861 100 -> Plus
3LHet 2243664..2243921 9..266 100 -> Plus
3LHet 2243998..2244288 267..557 100 -> Plus
3LHet 2247454..2247577 558..681 100 -> Plus
3LHet 2253992..2254215 862..1082 94   Plus