UFO08045.5prime Sequence
1156 bp (1050 high quality bases) assembled on 2011-07-17
> UFO08045.5prime
CAGTCGACATGTTCTATGAGCACATTATTTTGGCCAAGAAAGGCCCCCTA
GCCAGGATCTGGTTGGCAGCACATTGGGACAAAAAAATTACAAAGGCCCA
TGTATTTGAAACTAATATTGAAAAATCAGTGGAAGGGATTTTGCAACCAA
AAGTAAAATTAGCGTTGAGAACGTCTGGACATTTATTGCTAGGTGTTGTT
CGCATTTATTCCAGAAAAGCGAAGTATTTATTAGCTGATTGCAATGAAGC
CTTTGTCAAGATTAAGATGGCTTTTCGACCAGGCATGGTCGACTTACCAG
AAGGGCACAGAGAAGCTAATGTTAATGCAATAACACTCCCAGAAGTTTTT
CATGACTTTGATACAGCCCTGCCCGAATTAAACGATATTGATATTGAGGC
TCAGTTTTCTATAAATCAGTCCAGAGCTGACGAGATAACAATGAGAGAAG
ATTACGGTAGTTTGTCTCTTTCCTTACAAGATGACGGATTTGGTGATATA
GGCTTTGAAGCAGAAACGCCTGAAATTATACGATGCTCTATACCTTCAAA
TATTAATGATAAAATATTTGATAATGACGTTTTGGAAAATATTGAGTCTC
TGGATCCACATTCATTGGACGCCCATGCTGATATGCCTGGTTCTCGATTG
GATGGTGATGGGTTTGGAGATTCTTTTGGACAACCAGCCCTTTTTGAAGA
CGATCTTTTTGGTGATCCTTCTCAACCAGTTGAGCAGATTACAAAAGAAT
CTACTACTGTTCTCAACGCAGATGATTCTGATGAAGACGCCATTGATAAT
ATTCATAATGTCCCTTCGCCTGCAACCTCGCTCGTTAATTCGATTGAAGA
TGAGAAAGAGGAAAATAATTTAATGGACATGCAAGTGTGTCCGAAAATGT
GCCAATGAATGAAATAACGCTTGTTCAAAACGAGGATGAGGGATTTGCGT
TAGCTCCTTTAGATGTCTCAATGTATAAAGGCGTTACAAAGCCAACGCAA
AAGAAAACTTATTATTGACGAATAAAAAAATATTTTCTGGAAGAGGAAAT
GAAGCCTCAGTAGCGACCATCTGATTATATTACTACACCTTGAACTAGCC
CACCACCAAAGATTATGTATGGAGGACCTGGAGGTCCAACTTTTTCATAC
CACTCG
UFO08045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vtd-RB | 2527 | CG17436-RB | 88..1193 | 9..1110 | 5145 | 98.3 | Plus |
vtd-RA | 2299 | CG17436-RA | 88..1193 | 9..1110 | 5145 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 27136944..27137237 | 265..558 | 1470 | 100 | Plus |
3L | 28110227 | 3L | 27136612..27136869 | 9..266 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 27146395..27146574 | 682..861 | 900 | 100 | Plus |
3L | 28110227 | 3L | 27146627..27146828 | 861..1061 | 730 | 95.1 | Plus |
3L | 28110227 | 3L | 27140119..27140242 | 558..681 | 620 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 4232..4326 | 650..554 | 127 | 64.3 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 422..467 | 999..1049 | 115 | 80.4 | Plus |
UFO08045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:05 Download gff for
UFO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vtd-RA | 94..1170 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:20 Download gff for
UFO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vtd-RA | 88..1164 | 9..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:42 Download gff for
UFO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vtd-RA | 88..1164 | 9..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:42 Download gff for
UFO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 27146395..27146574 | 682..861 | 100 | -> | Plus |
3L | 27146628..27146851 | 862..1082 | 94 | | Plus |
3L | 27136612..27136869 | 9..266 | 100 | -> | Plus |
3L | 27136946..27137236 | 267..557 | 100 | -> | Plus |
3L | 27140119..27140242 | 558..681 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:20 Download gff for
UFO08045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3LHet | 2253759..2253938 | 682..861 | 100 | -> | Plus |
3LHet | 2243664..2243921 | 9..266 | 100 | -> | Plus |
3LHet | 2243998..2244288 | 267..557 | 100 | -> | Plus |
3LHet | 2247454..2247577 | 558..681 | 100 | -> | Plus |
3LHet | 2253992..2254215 | 862..1082 | 94 | | Plus |