UFO08046.5prime Sequence
1092 bp (1026 high quality bases) assembled on 2011-07-17
> UFO08046.5prime
CAGTCGACATGGCCGCCCTTGAAAAGAACGCTTCGGAGAACTTCAAGCAA
GTGCAATTGAAGAAATTGACGGTTCCTTCCATGGAGGCAACAACAAAACG
CGCGGCCTTGGGCGATTTGCAGAATCGCGGCATAAGTCGTCCCATCGCAG
CGAAGGATGCGGCACAGAAAGACTCCAAGGATCTCAAGCTCACAGACGCC
CTGCGCAATGCCAAAGCTCGGGTGGACAGCCACTGGAAGAAACAGCCACT
GGGCAGCACCAATGGCAATGGCAATGGCGCCGTTCCGCCCAAGGTCAACG
AGGGGGGCGTGTCGGCGTTTTTGCGTTCGAATTCGGTGCGCAATCGCGTT
CCGACCAAGACCACTGTAGAACCCACTAAAGTTACAGTCAAGTCCAGTTC
TTCCGAGAACGTGAACGAGCCCACCTTAAAGCGCGAGGACAGCAATCTGT
CGAAGAAGTCGCTGACCAAACTGCGTGCCGCTTTGGCCAAACCCGTGATG
GGAGTTTCAGGAATTCGACGGGAACCAGTAGCTGTTTCCCGCAAAGAGGC
AGAGACCAAGAAGGAACTGCCAGAAACCAAGAAGGACTCACTGGAAGTGA
AAAAGGATGCGACCAGGATGCCCCTTATTAGGGGCAACAGTGCAGTCACT
ACGACCACATCTACGATGCCCACCACCATGTCCCTTTCCAGCAAGCGCTT
GGCTGGAATCGAGGACATTGATGCCAATGACAAGGAGAACCTGGTACTGG
TCTCCGAAATATGTAAAACGACATCTACGACTACTTGTATCAGGTGGAGC
TGGAGCAGCCCATTCACAAGGATCACCTGGCCGGACAGAAGGAGGTGTCC
CACAAGATGCGAGCCGTGCTGATCGATTGGATCAACGAAGTCCACCTGCA
GTTCCATCTGGCTGCAGAGACCTTCCAGCTGGCGGGGGCCTATCATTGAT
CGCTACCTGCAGTGGTCAAGGACCACAAACGCACGTACTTGCATTGGTGG
GGAGGTGACAGCACTCTTCATAGGCACAAGGTACGAGGAGCTGTTCCCCG
CAGACATCGGAGAATTCGTCTTCATCCAGGGAAGAGACACCT
UFO08046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RB | 2556 | CG3510-RB | 209..1273 | 9..1076 | 4995 | 98.3 | Plus |
| CycB-RA | 2633 | CG3510-RA | 302..1350 | 25..1076 | 4915 | 98.3 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1265 | 25..1076 | 4915 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804873..22805568 | 1076..378 | 3010 | 97 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 381..173 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 172..25 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:00 has no hits.
UFO08046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:00 Download gff for
UFO08046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 262..1339 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:04 Download gff for
UFO08046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1286 | 9..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:30 Download gff for
UFO08046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RB | 209..1286 | 9..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:30 Download gff for
UFO08046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22804860..22805564 | 382..1092 | 96 | <- | Minus |
| 2R | 22805667..22805875 | 173..381 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 27..172 | 100 | <- | Minus |
| 2R | 22806274..22806291 | 9..26 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:04 Download gff for
UFO08046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18692365..18693069 | 382..1092 | 96 | <- | Minus |
| arm_2R | 18693172..18693380 | 173..381 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 27..172 | 100 | <- | Minus |
| arm_2R | 18693779..18693796 | 9..26 | 100 | | Minus |
