UFO08047.5prime Sequence
1121 bp (1025 high quality bases) assembled on 2011-07-17
> UFO08047.5prime
CAGTCGACATGGGTCGGAAGGCTGAATACAGTGAGAAACCGAAAAAGGGA
CCTGGGCGCAAGGCGCGCAAGCAAGGACCGCCTGTTTTTCGCAAACAATC
GTTTGCTCCCATGGAAGAGGAGGACAAGAAGCTTTCCCACCGACAGAAGC
AGAGGTTCGTTAAGCGAGAGCAAAAGAAAGTAGTCCAGAAGGCCAAACTA
CAGGAGAAGAGGGCCAAGGGAAAGTTACCACAACCGGCTAAGCGGAAGAC
GGCCTACAACAGCGACAGCGATCCTGAGGATAATGAAGAGGAACCACAGG
TTGCATCCTCCGATGAGGAGGTGCCTCAACTGGTGCCGGCTCCGAAGGGC
CAGAAAGCTACAGCTCCCAAGGGTTTTACAGATGATAATGATGCCTGGCT
GAAGCCCAAGAAGCAACAGAAGCAGCCAGAAACGGAGTCCGAGGAGGAGG
AGGAGGAGGATGAGGAGTCGGAGGAGGACTCCGAAGATGAGTTGGGAGAA
GAATGTGAAGAGGAAGAGGAGGGAGACGATGAGGAAGGATTGGAATCTGA
TGATGATACCGCTCAGGTTGGCAAGCTGGCCGATCTATCCGACGATGATG
ATGCCAACTCCGACGATGACTTTGACATATCTGGCGAGGAAGATGGTGCT
CAGGCAGACAGTGATGAAGAGGAGGATGAGGACGACGACGATGATGATGA
TGATGATGATGATGACAAGCTGCCCATCGAGCGGGCTAACAAGAAGTTGA
AAAAGCGCGAGGCAGAGGAAGCCCAACTGGCCGACGACGAAATGTTGGAA
ACCGTTGACAAGCAGGATGTTTTCCAGCTACCCGTCGAAGGCGAAGAAAC
CGAGAAGACCTAACCCTGCAGGAAGTGCAACAGCGCATAAAGGACGTCAG
TCTGGTTCTTTCCGACTTCAAAAGGTATCGTCAAGCGGATAGGTCTCGCG
GGGGAGTACATCGATTGCTGCGCAGGGATCTGTTGTTTGTATTAACAGCT
ACACGAAATTTTGATGGAGAAGCTGATGATATGTTGCCGCTGAACGGAGC
TAATGATATCTGGAGGCCTCAAAGATGTCGTCCTTACATACGCACCAATA
CCCTAAACGTCTAGGATGACG
UFO08047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8545-RA | 2949 | CG8545-RA | 103..1208 | 9..1107 | 5120 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12468911..12469879 | 105..1071 | 4370 | 98.8 | Plus |
| 2R | 25286936 | 2R | 12468753..12468849 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:04 has no hits.
UFO08047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:01 Download gff for
UFO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 114..1219 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:07 Download gff for
UFO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 103..1208 | 9..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:31 Download gff for
UFO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8545-RA | 103..1208 | 9..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:31 Download gff for
UFO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12468753..12468849 | 9..105 | 100 | -> | Plus |
| 2R | 12468912..12469882 | 106..1074 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:07 Download gff for
UFO08047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8356258..8356354 | 9..105 | 100 | -> | Plus |
| arm_2R | 8356417..8357387 | 106..1074 | 98 | -> | Plus |
