UFO08049.5prime Sequence
1084 bp (985 high quality bases) assembled on 2011-07-17
> UFO08049.5prime
CAGTCGACATGTCTTCAAAACTGATATCATCGTCGTTCCACAGTTCGCCC
CTCAGCGACTGTTTCAAAGTGGGCGAGTTCGAGCGACGTCTGGATGCTCT
ATTAGCCGACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGC
CGCAATATGGAACTGTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAG
TTTGTGGACAACACTCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCC
CCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCTCCCCAACGGCTG
GACATGATTTTAATGGCTCCTCAACGACTCCGGGATACGCTAACCAGGGA
TCGTTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGA
CTCCTTGCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACTACAGTA
CTCCAGTCTCGAAATACAATACGATGAATAGTTATGCCACCGTGGAGGAG
CGTCCTTCAGTGGACAGCCTGCTGAAAGAACTGGACAATGCTCACATCTA
TGCTGTTCCTAACGGATCTGCGCATAAATCTCCGACGCCGGGACGACATG
TCACCATCACCGTTCGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGAT
GGACCAGTTGGCACTGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTA
TACGCCCAATCATGCTGTTCCGGGACAACAGGTGCATCAGGCCTATACGT
CGCACGCCACCAAGGAACTGGATGATCTGATGGCTTCACTTTCCGACTTC
AAGGTTAGCAACGGAACAAACGGCATCGGAAACGGCAGTCATCCGCAACA
GCACTCGTCGACAGTGCAGCACCAGACGGTAACCGACTACGCCAGACCAA
ACAGGGTAGCCAGCAGCACATCTCACCCAGACGATCGAGAGACGACCATC
GTCGAGGACAGTCGCGAGGATCAGTGATTCTATGCTAGCAATCTACAGTC
AATATGAGTCGCAGAGTCAATACCGTGCAAGAAGCCTGCTGCAATGCTGC
CAGAAAGCCAATGTGGGTAGTGATCCAGGCCGTG
UFO08049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pax-RK | 2255 | CG31794-RK | 157..1226 | 9..1067 | 4945 | 98.1 | Plus |
| Pax-RJ | 2253 | CG31794-RJ | 183..1252 | 9..1067 | 4945 | 98.1 | Plus |
| Pax-RA | 2235 | CG31794-RA | 165..1234 | 9..1067 | 4945 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19410248..19410414 | 423..257 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 19410480..19410644 | 257..93 | 825 | 100 | Minus |
| 2L | 23513712 | 2L | 19404429..19404688 | 1047..798 | 800 | 93.5 | Minus |
| 2L | 23513712 | 2L | 19409402..19409552 | 805..655 | 740 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19409769..19409910 | 565..424 | 710 | 100 | Minus |
| 2L | 23513712 | 2L | 19409612..19409704 | 657..565 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 19411537..19411621 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6814 | 90..200 | 122 | 62.6 | Plus |
UFO08049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:08 Download gff for
UFO08049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 140..1215 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:28 Download gff for
UFO08049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 159..1234 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:49 Download gff for
UFO08049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pax-RA | 159..1234 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:49 Download gff for
UFO08049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19410248..19410413 | 258..423 | 100 | <- | Minus |
| 2L | 19410480..19410643 | 94..257 | 100 | <- | Minus |
| 2L | 19411537..19411627 | 1..93 | 96 | | Minus |
| 2L | 19404420..19404682 | 804..1055 | 93 | <- | Minus |
| 2L | 19409404..19409549 | 658..803 | 99 | <- | Minus |
| 2L | 19409612..19409703 | 566..657 | 100 | <- | Minus |
| 2L | 19409769..19409910 | 424..565 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:28 Download gff for
UFO08049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19409769..19409910 | 424..565 | 100 | <- | Minus |
| arm_2L | 19410248..19410413 | 258..423 | 100 | <- | Minus |
| arm_2L | 19410480..19410643 | 94..257 | 100 | <- | Minus |
| arm_2L | 19411537..19411627 | 1..93 | 96 | | Minus |
| arm_2L | 19404420..19404682 | 804..1055 | 93 | <- | Minus |
| arm_2L | 19409404..19409549 | 658..803 | 99 | <- | Minus |
| arm_2L | 19409612..19409703 | 566..657 | 100 | <- | Minus |
