UFO08050.5prime Sequence
1111 bp (1006 high quality bases) assembled on 2011-07-17
> UFO08050.5prime
CAGTCGACATGTCTTCGTTCTTCGATTGCTTCAATGATTTTCTGCAGAGC
GGCGGCAACTTAGTGCAGAATGTGTCCCAGGAGCAGGAACAGAAAATCGC
GGACCAGGAACTGGACGGCGTCATAGAGCTAATGCCGCCAACCACCCCCA
CGCCCAGCGAGAGTTCCAGTACCATTTCGGCCCCTAGTGAATCCTCCTTT
AGCGAGAAAATGGAGCACAGCTATATGCGAGATACGCCAGTGCGCAGCGA
TGTTCACAACGGCCTAACGCCCGCTAGGAACATTCTGGTCCGCCATCCGC
CACAGTGTCCCAGTTGCCACACATATCCGCCGCAGCACGAGGAGCTGTCA
GAGATTCAGCAGGCCCATGTGCCGCCCTATGATGAGGTAGTCGCCAAGGA
GGCAATGAATGAATGCGCTCGTATTGCAAAATACGTAAAGAACAACAATT
CGGATGAGCAAGATTGGGTGGCGCGCGTTAATAAATTTAATTGGACGCCC
ATGCAGGAGATGGTTTTCGAGAAGGTCTGCTCAATTCTGGACCAGGATCA
GTTGGCACGCTTGGCCAACGACAAACGTCAGCACGAGCCTATCCATCGTC
GCATAAGCTCGGACAAATCCGCGTCCAGGTTTCGCAAACTTCTAGCCAGC
GTGGCTTGGGAGTCACGCATTACGCAGTGGATCCATGCTCTGCTCATGGA
GCACTTGTCGCCTTCGTATATGGCCTCTTATCTGGAAATTCTTCAGACTC
TGAAGACCAAGTTGCCCACTTTAGTGGACAAGATGCTGTTTGGTAGGCCC
TTAAATAATAGTCAGGAACTGCTGGCACCGGTGATGAAAAAACGATGGGA
ACCAAATATCATGCCCAAGTCCCGTCAGCTAACGCATAACGCCATCATGG
TGTGCTGCCCAACATGCCGACACTGGAACAGTTTCGGACCGCATGCAGAG
TGTACCAGCATTATCTACTATCCACTCAGTGATCAGATTTCGCTGCCGAT
ACAACAACAGATGGATCAGATCTGGACCATGGTGGCCGAACATGGTCATC
CCACCCGCGTCAATCCACGATGGCCCACAGAACCAAGTCGTGACATCTTA
TTCGTGGATAT
UFO08050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd1-RF | 3437 | CG8233-RF | 123..1166 | 9..1040 | 4835 | 98.4 | Plus |
| Rcd1-RD | 3497 | CG8233-RD | 123..1166 | 9..1040 | 4835 | 98.4 | Plus |
| Rcd1-RA | 3302 | CG8233-RA | 123..1166 | 9..1040 | 4835 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14151080..14151546 | 949..485 | 2235 | 99.6 | Minus |
| 2R | 25286936 | 2R | 14151607..14151926 | 484..165 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14152846..14153001 | 164..9 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:52 has no hits.
UFO08050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:09 Download gff for
UFO08050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 110..1170 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:31 Download gff for
UFO08050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 114..1174 | 1..1046 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:50 Download gff for
UFO08050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd1-RA | 114..1174 | 1..1046 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:50 Download gff for
UFO08050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14152846..14153010 | 1..164 | 97 | | Minus |
| 2R | 14151016..14151546 | 485..1008 | 97 | <- | Minus |
| 2R | 14151607..14151926 | 165..484 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:31 Download gff for
UFO08050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10038521..10039051 | 485..1008 | 97 | <- | Minus |
| arm_2R | 10039112..10039431 | 165..484 | 100 | <- | Minus |
| arm_2R | 10040351..10040515 | 1..164 | 97 | | Minus |
