UFO08051.5prime Sequence
1146 bp (1014 high quality bases) assembled on 2011-07-17
> UFO08051.5prime
CAGTCGACATGTTGCGAATGATGCGAAGTTCCTCCTCCAGATGCTCTAGT
CTTCAGCAGAGCTTGTTGAAAAGTTCGACACGCTGTCTGGGTTCCGTTAT
ACCGGACCTTAAACTGAAGGACTTCCCGATCGCCAATGAGCCAATCCTGG
GATATCTCAAGGACTCTAAGGAGCGTAAGGCCCTCGAGCAGGCTCTAAAG
GGCACGGCCTCGAGTTGCGAAGACATCCCCATCGTGATCGGCGGCAAGGA
GTACAAGACGCCGGAGGTTCGATACCAGGTCATGCCCCATGACCACCAAC
ACAAGCTGGCCAGCTTCTACTACGCCGACAAGAAGCTTATCGAGAAGGCC
ATCAAAACGGCGGTGGAAACACAGCCCAAGTGGGACCGTGTGTCGATTGC
AGACCGTCTGAAGATCTGGGAGAAGGCAGCGGACCTAATGGCAACGACGT
ACCGCCAGGATCTCAACGCCGCCACCATGCTGGGTCAGTCAAAGACGGCG
ATTCAGGCGGAAATCGATTCAGCAGCGGAGCTTATCGACTTTATACGAAT
GAATGCCTATTTTCTGAAGGAGGTCACTAAATACCAGCCCATCAGCGAGA
ACATAAAGGTCACGAAGAACTCCTTGCGCTATCGTGGCATTGATGGCTTC
ATCGCCGCTGTCAGCCCCTTTAACTTTACGGCCATCGGCGGCAACTTGTC
CTACACGCCAGCTCTGATGGGAAACGGCGTGCTGTGGAAGCCCTCGGACA
CTGCCATGCTGTCCAACTGGATTATTTTCAAGATTATGCGCGAAGCGGGA
GTGCCCGATGGAGTCGTTAACTTTGTGCCCGCCGATGGGCCCGTGTTTGG
AGACACGATTACGCCAGTCCCCACCTGGCAGGCATCAATTTCACCGGCTC
TGTGCCACCTTTAACCGCCTGTGGAAGCAGTGGGCAACAACATTGACACT
ACGTGAACTTTCCTCCGCTTGACTGGTGAGTGTGGCGGCAGAATTTCCAC
TTTATACATGCATCAGCGACGTTGAGTCAGTGGTGACCTCCCACGAATAC
GCCTCAGCATTTGGAGTACTGCGCAGAATGTTTCCGCCTGCTCGCGAATG
TGTGGCGGAATCCCTGGCAAGAATCAGAGCTGTATGCCAGCAGCCA
UFO08051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh1-RE | 2679 | CG7145-RE | 131..1242 | 9..1115 | 5170 | 98.4 | Plus |
| P5CDh1-RF | 2823 | CG7145-RF | 275..1386 | 9..1115 | 5170 | 98.4 | Plus |
| P5CDh1-RD | 2772 | CG7145-RD | 224..1335 | 9..1115 | 5170 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21839061..21839536 | 547..72 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 21838492..21838680 | 906..719 | 895 | 99.5 | Minus |
| 3L | 28110227 | 3L | 21838740..21838913 | 720..547 | 870 | 100 | Minus |
| 3L | 28110227 | 3L | 21838296..21838433 | 1041..907 | 445 | 96.4 | Minus |
| 3L | 28110227 | 3L | 21839666..21839730 | 73..9 | 325 | 100 | Minus |
| 3R | 32079331 | 3R | 21879463..21879637 | 661..835 | 290 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:56 has no hits.
UFO08051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:10 Download gff for
UFO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7145-RD | 224..1343 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:33 Download gff for
UFO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 216..1335 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:51 Download gff for
UFO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh1-RD | 216..1335 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:51 Download gff for
UFO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21838492..21838679 | 720..906 | 99 | <- | Minus |
| 3L | 21838741..21838912 | 548..719 | 100 | <- | Minus |
| 3L | 21839061..21839534 | 74..547 | 100 | <- | Minus |
| 3L | 21839666..21839737 | 1..73 | 94 | | Minus |
| 3L | 21838222..21838434 | 907..1115 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:33 Download gff for
UFO08051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21831322..21831534 | 907..1115 | 92 | <- | Minus |
| arm_3L | 21831592..21831779 | 720..906 | 99 | <- | Minus |
| arm_3L | 21831841..21832012 | 548..719 | 100 | <- | Minus |
| arm_3L | 21832161..21832634 | 74..547 | 100 | <- | Minus |
| arm_3L | 21832766..21832837 | 1..73 | 94 | | Minus |
