UFO08054.5prime Sequence
1124 bp (1008 high quality bases) assembled on 2011-07-17
> UFO08054.5prime
CAGTCGACATGGTGCAGATGATATTCCTGTTTGCTATCCTTGCTGTAATG
ACCATTGTCCTAATGGAGGCCAACACTGTTTTGGCACGTGATTGCCTATC
TGGAACTTTCGGAGGTCCTTGCTGGGCCTGGAGTGGAGAAAAGTGCCGCC
GTCTCTGCATTGAGGAGGGACATGTCAGTGGACACTGCAGTGGCGCAATG
AAGTGCTGGTGCGAAGGATGCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCA
GAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
TCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGATAA
CTTGTGCTTATTTTTCTTTACGTCTTTAAAACGCGTATATCAGCTGACGG
TCTGGTTATAGTACATGAGCACTGACTGAAATGCCTCAAATGTTCTTACG
ATGCCAATGGAATATCACGGGTGGCAATCAGTGATTTTTTCTCCAATTTA
GCTCTAGTCTGGAAGATCCTACTC
UFO08054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl3-RA | 360 | CG32283-RA | 31..251 | 1..221 | 1075 | 99.1 | Plus |
| Drsl4-RA | 323 | CG32282-RA | 37..224 | 28..215 | 460 | 83.6 | Plus |
| Drsl2-RA | 333 | CG32279-RA | 158..236 | 143..221 | 200 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3315026..3315246 | 1..221 | 1075 | 99.1 | Plus |
| 3L | 28110227 | 3L | 3315656..3315843 | 28..215 | 445 | 82.4 | Plus |
| 3L | 28110227 | 3L | 3314506..3314584 | 143..221 | 200 | 83.5 | Plus |
Blast to na_te.dros performed 2014-11-27 00:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 790..857 | 123 | 68.1 | Plus |
UFO08054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:11 Download gff for
UFO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dro3-RA | 31..251 | 1..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:37 Download gff for
UFO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl3-RA | 31..251 | 1..221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:54 Download gff for
UFO08054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl3-RA | 31..251 | 1..221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 01:08:54 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:24:37 has no hits.
