UFO08056.5prime Sequence
1148 bp (1034 high quality bases) assembled on 2011-07-17
> UFO08056.5prime
CAGTCGACATGGGACCAAGGCTCTATCCCGCTGCGATCCTCATCCTCCAT
TGCCTGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAACCAGAACCA
CACCCAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCTGCACAGGC
CTCCATACGATGGATACGATTGGCACAAACACTTTAACCGAGATGCCGAA
CCAAAGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTCAAACACAG
ATCAGGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATATTTCGAACT
GGAGCAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGCTGGAGGAA
TGGGGTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTATTCTTTGA
CGGTGAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGACATTCAAA
CGGTTGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTGTGACCGAA
AAAGAGAAAGCAATGATAACGCCGGAACTGAAACCATTGATCTTAAGATT
CGGCCGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGCCTTGGAAG
CCTTGCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCCGGAACATG
AGACATAAGAGTGCTAAAAGGTCTCACGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGAGCT
CGATATCAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACC
TGAATCGGCCAGCGGCATCAGCACCTGTCGCCTTGCGTATAATTATTTGC
CATGGGTGAAAACCGGGGGGCGGAAGAAAGTTTGTTCCATATTGGCCACG
TTAATCAAAACTGGGTGAAACCTCACCAGGGAATGGCGTGAACGAAAA
UFO08056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34051-RA | 771 | CG34051-RA | 4..673 | 8..677 | 3350 | 100 | Plus |
| CG34051-RB | 768 | CG34051-RB | 4..670 | 8..677 | 3295 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19960404..19960595 | 494..303 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 19960167..19960350 | 677..494 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 19960854..19961027 | 181..8 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 19960659..19960781 | 304..182 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:08 has no hits.
UFO08056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:12 Download gff for
UFO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..677 | 7..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:40 Download gff for
UFO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..677 | 7..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:56 Download gff for
UFO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34051-RA | 1..677 | 7..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:56 Download gff for
UFO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19960854..19961031 | 1..181 | 98 | | Minus |
| 2L | 19960164..19960350 | 494..681 | 98 | <- | Minus |
| 2L | 19960405..19960593 | 305..493 | 100 | <- | Minus |
| 2L | 19960659..19960781 | 182..304 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:40 Download gff for
UFO08056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19960164..19960350 | 494..681 | 98 | <- | Minus |
| arm_2L | 19960405..19960593 | 305..493 | 100 | <- | Minus |
| arm_2L | 19960659..19960781 | 182..304 | 100 | <- | Minus |
| arm_2L | 19960854..19961031 | 1..181 | 98 | | Minus |
