UFO08058.5prime Sequence
1118 bp (987 high quality bases) assembled on 2011-07-17
> UFO08058.5prime
CAGTCGACATGTCCGTGCGCGTGATCAACGACGAGTCCCACTTCCAGGCG
GAGTTGGCCCAAGCGGGCATTCAATTGGTTGTGGTGGACTTCACAGCTTC
GTGGTGTGGTCCCTGCAAGCGGATTGCGCCCATCTTCGAGACGTTTCCAA
CAAAGTACCCAAAGGCCATCTTCCTGAAAGTGGATGTGGACAAGTGCCAG
GACACGGCTGCTGGACAGGGCGTTTCGGCCATGCCAACATTCATCTTCTA
CAGGAACAGGACCAAGATCGATCGCGTCCAGGGTGCGGACGTCAATGGGC
TCGAGGCCAAGATCCAGGAGCACATCGGTACATCCGGTGGCGAGGAGGGG
GGCGAGGATTACGGGCAGGGATTGATGGAACTGAATACATTTATTTCGAA
GCAGGAGTGCGAGTGCCTCAACGAAGCTGATGACCACAACTTAAAGCACG
CCCTGGCCTCCGCCGGTGGCTACCTGCAGTCCGATTGCGATGAGCAGCTC
ATCCTGTCCATCACCTTTAATCAGGCTGTGAAGATCCACTCTTTGAAGTT
CAAGGCACCTTCGCACCTGGGTCCCAAGGATGTGAAGCTGTTCATTAACC
AGCCCCGCACGATTGACTTTGACATGGCCGAGTCCATGAACAGTGTGCAG
GATCTAAGCCTGGCTCAGAAGGAGCTGGAGAGTGGAGTGCCCGTGAATCT
GCGCTACGTCAAGTTCCAGAATGTGCAAAACATCCAAATCTTCGTGAAGA
ACAATCAGTCAGGTGGCGATGTGACGCAGATTGATTATATCGGCTTCATC
GGTTCCCCCATCATGACCACCAAGATGAACGACTTCAAGCGAGTGGCTGG
CAAGGAAGGGCGAGAGCCACGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAAGTTAGTGGTCATAATCATAATCATAATCTTATCATATCACA
ACTAGCCTAGGAGATCCTGGGTCATGACTTAGTGCTTGCATTCTCACCAA
TAAAAAAACGCCCAGCGGCACCGAGCGTCTTGATCAAATCAGATTGGAGT
TCTGAGTCATTACTGAATCTATCACAGGGATTCAAGCGAGCTCGAATTTC
AATTACGCCCGGCCTTGC
UFO08058.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 1123 | CG5495-RA | 164..1025 | 8..870 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5766009..5766375 | 8..374 | 1835 | 100 | Plus |
| 3L | 28110227 | 3L | 5766432..5766716 | 374..658 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 5766774..5766986 | 657..870 | 1020 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:34 has no hits.
UFO08058.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:06 Download gff for
UFO08058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 156..1031 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:23 Download gff for
UFO08058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 157..1032 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:44 Download gff for
UFO08058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 157..1032 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:44 Download gff for
UFO08058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5766433..5766716 | 375..658 | 100 | -> | Plus |
| 3L | 5766776..5766993 | 659..878 | 98 | == | Plus |
| 3L | 5766002..5766375 | 1..374 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:23 Download gff for
UFO08058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5759102..5759475 | 1..374 | 98 | -> | Plus |
| arm_3L | 5759533..5759816 | 375..658 | 100 | -> | Plus |
| arm_3L | 5759876..5760093 | 659..878 | 98 | == | Plus |
