UFO08059.5prime Sequence
1148 bp (1031 high quality bases) assembled on 2011-07-17
> UFO08059.5prime
CAGTCGACATGGCGGACGACTTGCATAATTATAAGCTACAATTGCAACAA
GTGGAGGCAGCTCTTCAAACTGATCCAGAAAATGAAGAGCTATTAAAACT
CAGAAGTGATCTTGACGAAGTTATTACCCTTACTCGTGATTTGATACAAA
CTCAACTGGAAGAACAAAATAAATCTTCATATGTGGAGCCATCATCAACC
AAAAGAGATTCGTCCAACTACTTCGACGAAATAGAAGCAGCTCTATTAGA
AGCAGAAAAATTAGTTTCAGCTGCTAAGATTTGGAAAAAAGGAGACAAGT
GTCAAGCTAAATGGAAGGAGGATCGTCAGTACTACGATGCAACTATTGAA
GATATATCAAGTACAGGAGAAGTTAATGTAATATTCGATGCCTATCAAAA
TCGATCTACGACCCACGTCAATGAGTTGCGTGAACGTACTATTCGCAACG
AAGTTTTTCCGTCAAACAAGCGGCACAGGCCCAATCAAAAAGAATATTTA
AAAAAACGTAAGCAAAAAAAGCAACAGCGCTTCAAGGACTTGGAAGAGGA
ACGTGAATCAGACAAGAACAAATGGCTTAATTTTAACAACAAAAACCAAA
AAAAAAACGGAATGAAAGCAAGAAGTATATTTGCGTCTCCGGATAATGTA
AGCGGCAGAGTAGGAGTCGGCACTTGTGGAACTGCAGGAAAGGGCATGAC
AGATTTTACTGTGGGTGAAAAATATAGAAAAGGTCTTGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCCCTCATCGCAGTAC
TGTTGTAAATTCATTAAGCATTCTTGCGACTGGCAGCATCACAAACGCAT
GATGAACCTGAATCGCAGCGCATCAGACTGTCGCCTTGCTATAATATTTG
CCCATGGTGAACCGGGGCCAGATTGCATTGCCTGGTTTAATCAACTGT
UFO08059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17454-RA | 880 | CG17454-RA | 103..831 | 9..737 | 3645 | 100 | Plus |
| CG17454-RB | 1163 | CG17454-RB | 428..1114 | 51..737 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23715902..23716321 | 51..470 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 23716369..23716640 | 466..737 | 1345 | 99.6 | Plus |
| 3L | 28110227 | 3L | 23715125..23715169 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:38 has no hits.
UFO08059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:07 Download gff for
UFO08059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17454-RA | 91..829 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:25 Download gff for
UFO08059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17454-RA | 93..831 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:45 Download gff for
UFO08059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17454-RA | 93..831 | 1..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:45 Download gff for
UFO08059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23716373..23716640 | 470..737 | 100 | == | Plus |
| 3L | 23715115..23715166 | 1..50 | 92 | -> | Plus |
| 3L | 23715902..23716320 | 51..469 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:25 Download gff for
UFO08059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23708215..23708266 | 1..50 | 92 | -> | Plus |
| arm_3L | 23709002..23709420 | 51..469 | 100 | -> | Plus |
| arm_3L | 23709473..23709740 | 470..737 | 100 | == | Plus |
