UFO08062.5prime Sequence
1177 bp (1054 high quality bases) assembled on 2011-07-17
> UFO08062.5prime
CAGTCGACATGGCCCGTTTCTTCGATTCCCGCACCACGATCTTTTCACCG
GAGGGCCGCCTCTATCAGGTGGAGTATGCGATGGAGGCCGCTTCGCAGTC
GGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTTGGCCACTG
AACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATC
TCGTGGTTGAACGAGAACATTGCCTGTTGCGCCACGGGCAACACGGCGGA
TGGTAACGTGCTGGTTAACCAACTGCGAATGATCGCCCAACAATATCAGT
TCAACTTCGGTGAGATGATTCCTTGCGAGCAGTTGGTCACGAACCTTTGC
GATATCAAACAGGCGTATACGCAATATGGTGGCAAACGACCCTTCGGGGT
ATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCAGTTGTATC
AGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGCCACCTGCATTGGC
CGCAAGTCAGGGGCAGCCATGGAAATGCTTCAGAAGGAACTATTTAGCAA
GGGCTACGTAAGTCCTTCGGTCGAGGAGGCCAAGGATGTAGCCATCAAGG
TCATGGGCATGACCTTGGGCAGAGATAGCTTGACCCCCGAAAAACTGGAA
ATTGCTTTCGTACAGCGTTACGGTAACACCACCGTCTTTCATATTTTAGA
AAAAAACGAGATCCACCGGCTAATCGAAAGGAATAACAATTTGAAGAGGC
GCGTCGGGTCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATCATTAGCATTCTGCCGA
CAATGGAAGGCATCCCAAACGCATGAATGAAACTTGAATCGCCAGGCGGC
ATTCAGCACTGTTCGCCTTTGCGTATATATTGGCAATGTGAAACGGGGCG
AAATGGTCCATATTTGGTCACGGTTTA
UFO08062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3T-RA | 889 | CG1736-RA | 35..787 | 9..761 | 3765 | 100 | Plus |
| Prosalpha3-RA | 973 | CG9327-RA | 107..586 | 24..500 | 395 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31122629..31123381 | 761..9 | 3765 | 100 | Minus |
| 2R | 25286936 | 2R | 20995502..20995731 | 271..500 | 370 | 77.4 | Plus |
| 2R | 25286936 | 2R | 20995115..20995236 | 24..145 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:25 has no hits.
UFO08062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:15 Download gff for
UFO08062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 131..894 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:52 Download gff for
UFO08062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 131..894 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:03 Download gff for
UFO08062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 29..792 | 1..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:03 Download gff for
UFO08062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31122624..31123387 | 1..766 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:52 Download gff for
UFO08062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26948346..26949109 | 1..766 | 99 | | Minus |
