UFO08069.5prime Sequence
1131 bp (1020 high quality bases) assembled on 2011-07-17
> UFO08069.5prime
CAGTCGACATGTTTCTGGGCTTCTTGGTGGATCTGCTGTACTGCCGACGC
TGCGGGGACGACTGTATGATGGAATTCCCATCGACTTCCGCGAATGAAGA
AGCAGCGCCGAAAGTGGTAAAGGTCGAACTGCCGCCGCTGCCGCCACTGA
CCTTTGAACTCATCCGCAATCCATTGGCTGCCGACCAGGAGTGCGATGAT
AGCTTCGAAGGCTTCGTCGATGGTTATGATGATCCCAGGCTGCCGGAAAC
CATCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT
ATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATT
CATCAGGCGGGCAGATGTGAATAAAGGCCGATAAAACTTGTGCTTATTTT
TCTTTACGTCTTAAAAGCGTATATTCAGCTGACGGTTCTGGATTATGGTA
CTGAGCACTGACTGAATGCCCTCAAATGTTCTTACGATGCATGGAATATT
CACGTGTATCCAGGACTTCCAATTAAGCTCT
UFO08069.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3713-RB | 500 | CG3713-RB | 55..303 | 9..257 | 1245 | 100 | Plus |
| CG3713-RA | 987 | CG3713-RA | 55..303 | 9..257 | 1245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 846855..847103 | 257..9 | 1245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 826..893 | 123 | 68.1 | Plus |
UFO08069.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:17 Download gff for
UFO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3713-RA | 60..314 | 3..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:01:25 Download gff for
UFO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3713-RA | 49..303 | 3..257 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:16 Download gff for
UFO08069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3713-RA | 49..303 | 3..257 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:46:16 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 15:01:25 has no hits.
