UFO08070.5prime Sequence
1171 bp (1062 high quality bases) assembled on 2011-07-17
> UFO08070.5prime
CAGTCGACATGACCATCATCGAGAGCAACTATATATCCGTGCGCGAGGAA
TATCCCGATATAGATAGTGAGGTGCGCGCCATATTGCTGAGCCACGCCCA
GAATGGAATCACGATATCGAGCATCAAGAGTGAATATCGAAAACTGACGG
GCAATCCATTTCCACTGCACGACAACGTGACGGATTTCCTGCTGACCATT
CCCAATGTGACCGCTGAGTGCAGCGAGTCCGGTAAGCGGATCTTCAACCT
GAAAGCGAGCCTGAAGAACGGTCACCTCCTGGATATGGTGCTCAACCAGA
AAGAGCGCACCAGCGACTACAGCAGCGGAGCTCCGTCCCTGGAGAACATA
CCACGAGCACCTCCACGCTACTGGAAGAATCCCTTCAAACGGAGGGCTCT
GTCCCAGCTGAACACCAGCCCGAGGACCGTGCCCAAGATAACGGATGAAA
AGACCAAGGATATCGCCACCAGGCCGGTTTCGCTGCATCAAATGGCCAAT
GAGGCAGCGGAGTCGAACTGGTGCTACCAGGATAATTGGAAGCATCTCAA
CAATTTCTACCAGCAAGCCAGCGTAAATGCGCCAAAAATGCCAGTACCCA
TCAACATCTACAGCCCCGATGCCCCAGAGGAACCAATCAATTTGGCTCCA
CCTGGGCATCAGCCAAGCTGCAGAACCCAAAGCCAGAAAACCGAACCGAC
TGAAAACCGCCATTTGGGCATCTTTGTGCATCCATTTAACGGCATGAACA
TAATGAAGAGACGCCACGAAATGACGCCCACGCCAACGATTTTAACCAGT
GGAACCTACAACGATTCTCTGCTGACGATTAACTCGGATTACGATGCCTA
TCTGCTGGACTTTCCGCTTATGGGCGATGATTTTATGCTATATCTCGCCC
GAATGGAGCTAAAATGCCGATTTAGGCGTCACGAACGCGTCCTGCAGTCA
GGACTTTGTGGTATCCGGGACTGACGATCAATGGCGCCCGAAATCGGTTT
AAAAAGGAGTCCAATTACCCGGAGGGTACCTCAGAACATCGTTCAATTAT
CGGGATCGGTGGACCTTATGGCGCGGGCCAAGCCTTTGGTTTCAGAATCG
AGAGCACGGATTTCCGGCTATGGAATCAAGGGAGAGTGCCAAAATGCATG
GGTGGGCGATTCTAACAAATC
UFO08070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| osk-RA | 2869 | CG10901-RA | 433..1578 | 7..1171 | 5160 | 97.3 | Plus |
| osk-RC | 2869 | CG10901-RC | 433..1578 | 7..1171 | 5160 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8936442..8936911 | 548..1021 | 2175 | 98.7 | Plus |
| 3R | 32079331 | 3R | 8935929..8936346 | 130..547 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 8935558..8935684 | 7..133 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:15 has no hits.
UFO08070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:13 Download gff for
UFO08070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RA | 420..1500 | 1..1091 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:45 Download gff for
UFO08070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RC | 425..1505 | 1..1091 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:59 Download gff for
UFO08070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| osk-RC | 425..1505 | 1..1091 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:59 Download gff for
UFO08070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8935929..8936346 | 130..547 | 100 | -> | Plus |
| 3R | 8935550..8935680 | 1..129 | 96 | -> | Plus |
| 3R | 8936442..8936973 | 548..1091 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:45 Download gff for
UFO08070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4761272..4761402 | 1..129 | 96 | -> | Plus |
| arm_3R | 4761651..4762068 | 130..547 | 100 | -> | Plus |
| arm_3R | 4762164..4762695 | 548..1091 | 97 | == | Plus |
