UFO08071.5prime Sequence
1148 bp (1021 high quality bases) assembled on 2011-07-17
> UFO08071.5prime
CAGTCGACATGAGCGCCAGCGAAGGCATCAGTCTCCCGGGCAACGAGGAA
ACCACTCCGCCGCATGAAAAACATAAACAAAAGGCCAAGAAGGCCAAAAA
GAAGTCCCGGAGTGCCAAAGAAAGTGTTCCCAATGCAATGGACGCGAAAG
CCACTGCCAGCTACTTTAGTTTGAGCATCGTGGGCCAAATAGTCTCGGCC
ACCTTTCCCCTGGGTCCCGACAAGGAGTTCGTCTTCCTGCGCTACGAAAT
GGTCGCTGGTCCCGACTGGCAGCTGTCCTCCGGACCCCAGCACGGACTCA
CCCAGCTGGCCACCAATAGAAGGGGCCATTTCAACGAACCGATTGTCTTC
AATATGCCCATCGAGGTGACCTACAAGAGCACCAGTCCATATGGCTGGCC
ACAGATCCTGGTGACCGTGTTCGGACGCAGTGGCCTGGGCAGGGAGACAC
TACTCGGTTACGCTCACATCCACCTGCCCGTTTTCGGCAGTCGTCGTCCA
GCGGATCAGACGGAGCAGCTGCAGGCGCCCATCCTGATGCCCAAGTGCCC
CAACATGATGGCGGACATCACCAGTTGGCTGCTGCGCCGCGAGCCGGAGC
TGAAGGACCCCAAAGTGCTGCTGGACAACCTGAAGTGCAAGGGACTCTCT
ATGGAGTCGTACGGCAGCCTACAGTTTCAGCTGTCCTCCGTGATGAGGGG
CGCCCGCAAGCTGGGCTACCATTGGCACTCCGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCAACTCATCGCAGTACTGTG
TAATTCATTAGCATTCTGCGAACATAAGCATCACAACGCATGATGAACCT
GATCGGCAGCGCATCAGAACTTGTTCGCCTTGCGTATATATTGGCCCATG
TGAAACGGGGCGGAAAGTTGCAAATTGGCCGTATATTCGAACTTGGTA
UFO08071.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14870-RA | 881 | CG14870-RA | 101..824 | 8..731 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15482006..15482395 | 8..397 | 1950 | 100 | Plus |
| 3R | 32079331 | 3R | 15482513..15482847 | 397..731 | 1675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:18 has no hits.
UFO08071.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:14 Download gff for
UFO08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14870-RA | 95..824 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:47 Download gff for
UFO08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14870-RA | 95..824 | 1..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:00 Download gff for
UFO08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14870-RA | 95..824 | 1..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:00 Download gff for
UFO08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15482513..15482847 | 397..731 | 100 | == | Plus |
| 3R | 15482000..15482394 | 1..396 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:47 Download gff for
UFO08071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11307722..11308116 | 1..396 | 98 | -> | Plus |
| arm_3R | 11308235..11308569 | 397..731 | 100 | == | Plus |
