UFO08074.5prime Sequence
1126 bp (1029 high quality bases) assembled on 2011-07-17
> UFO08074.5prime
CAGTCGACATGAGTCAAATACTACGCATGCTTTACTGTCTTCCCATTTGG
CTGCTGCTGCTTTTGCGTGCTGATGAGGCAAACGGTAAGGGCATATGCCT
GTATTTCAGTGAAAAAACAGCTTCTTGGTTTAGTGCCCTGACCATCTGCA
AAAGCCTCCACATGTGCTTGGCTGATCTAAACACCGAAGTTACCCTATTC
CAGATGAAAAGCAAAATAAACCAAGACGACCACGAGTACTGGTTTGGATT
GAATGCACACGATAAGCCCACCTACAGATACGTTTCGAACAACAAGTCCA
TTGAGTACTCGCCGCACAATTCAAAGCTGGTGAACAACGAAGGATGCGTC
TATGTTAAACAGCAAAACGACTTTTTCAAATTTGAATCGGCAAAGTGTCG
CGAACACCGGAGATTCATCTGTACTAAAACCGATGAATGCGATGGTGTTA
GCATGAAACATGGAAACTCAAAATGCGTCATAACCGCAGAGGAAAGAGAT
CTTGTAGCCTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCA
GGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGC
CTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAAC
GCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT
CATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTAC
GCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCT
GCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCCCCCAGGGATTGCTGAAACGAAAAACATATCTCAATAAACCCTTA
GGAAATAGCCAGGTTTCACCGTAACACGCCACATCTGCGAAATATATGTG
TAGAACTGCGAATTCGTCTGCTATCCACTCCGAGCGATGAAACGGTCAAG
TTGCTATGAACGGTTAACAGATTAAA
UFO08074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34033-RA | 566 | CG34033-RA | 7..510 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9820738..9821130 | 120..512 | 1965 | 100 | Plus |
| 2R | 25286936 | 2R | 9820569..9820680 | 9..120 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:33:53 has no hits.
UFO08074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:20 Download gff for
UFO08074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34033-RA | 4..520 | 6..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:03:21 Download gff for
UFO08074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34033-RA | 4..520 | 6..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:24 Download gff for
UFO08074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34033-RA | 4..520 | 6..525 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:24 Download gff for
UFO08074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9820566..9820679 | 6..119 | 99 | -> | Plus |
| 2R | 9820738..9821130 | 120..512 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:03:21 Download gff for
UFO08074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5708071..5708184 | 6..119 | 99 | -> | Plus |
| arm_2R | 5708243..5708635 | 120..512 | 100 | == | Plus |
