UFO08076.5prime Sequence
1142 bp (1047 high quality bases) assembled on 2011-07-17
> UFO08076.5prime
CAGTCGACATGAGTGATTTGGTAGGTATCGTTTATAATGACTATCCCATG
GAGAGCGAGGAGGATTTCAATAGGCGCAGGAGGGATCTTGATAATATATT
TTTCAACTGCAGCACAAGGAAAAATCAGGAACAACAATTCGAAGCCAAGC
GTCCCATACTAAACTCATCGAACTACAATAAGATATTCGGAGCATCTTTG
GGAGATGACATGGACTTCGAGGACTTTCCCGACCTCAACCAACCACTGCC
AAATATTTCCATTCACGAGCAACTGCGTCTGGCTTCCGGGAACCGCGAGA
TAATCGCGAGCATTCAGCGAAATCACCAAAAGCGACTCGAAAACCTTTGG
CACTCGGAACTAATAGAAAAACTAGCGCAAGAGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTG
TATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGT
GTAACAAGGTGACACTAATCCCATATCACAGCTCACGTCTTTCATTGCAT
ACGAATCGATGACATCATCAGCGGCAGAATTGTAATAAGCGATAAACTTG
GGCTATTTCTTACGGCCTGAAAGCGTATATTCAGCTGAACGG
UFO08076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17650-RA | 534 | CG17650-RA | 42..416 | 9..383 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1758404..1758660 | 383..127 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 1758932..1759052 | 129..9 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:01 has no hits.
UFO08076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:21 Download gff for
UFO08076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17650-RA | 20..404 | 1..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:04:20 Download gff for
UFO08076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17650-RA | 35..419 | 1..387 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:27 Download gff for
UFO08076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17650-RA | 35..419 | 1..387 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:27 Download gff for
UFO08076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1758404..1758658 | 129..383 | 100 | <- | Minus |
| 2L | 1758933..1759058 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:04:20 Download gff for
UFO08076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1758404..1758658 | 129..383 | 100 | <- | Minus |
| arm_2L | 1758933..1759058 | 1..128 | 96 | | Minus |
