UFO08079.5prime Sequence
1093 bp (982 high quality bases) assembled on 2011-07-17
> UFO08079.5prime
CAGTCGACATGTATTTCTTCGAGAAGATCAGTGATCAGTTTTGCCGCGTT
GTGCGCACCAACCTAAATATACCACTATCCTTTTGCGAAACACGGAACGT
CTGGAAATTCTCGAACACTTCCGATACAATGATATTCTTCTTCACCCTCA
CCTTTGGTATCCTTCGAGCGTTCTCAAATTTTATAGATTTCATGAACCTT
TTCTTCGGAGGGATGCGTTTGGGGCGGCCAAGCAATCTCTTGATTTTGAG
GGGCGAAAATTCGCGCCGCTTTCAAGTCATCAAACACTTTTTAATGCTGA
ATGCATGGATATTAGTGATATACGCCATGGTATTTATCAAGCCGCATTAC
ATGGTTCCCTTCGTTGTGCTTTCGTTGATCATCTTGATCATCTATGTGTT
CGTCGTGGCATTAGATATCCTGCGACATGTCGGGATACCACTGGACCGCA
AGATGATCCTTTCGGAAATGATCCTCAACTTGAGCTGTGTTGTTTACGTG
CAGGGGGTCCTCAAGCAACAGATCTTCTCTGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTT
GCCCATGGTGAAACGGGGCGAGAGTTGTCCATATTGCCACGTTTAAATCA
ACTGTGAACTCACCCAGGATTGGCTGAACGAAAACATATCTCAATAACCC
TTTAGGAAATAGCCAGTTTCACGTACACGCCACATCTGCGAATATTTGGG
TAGAACTGCCGGAAATCGTCTGCATCATCGAGCGATGAACCGT
UFO08079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33252-RA | 819 | CG33252-RA | 94..615 | 9..530 | 2610 | 100 | Plus |
| CG43075-RA | 757 | CG43075-RA | 86..594 | 16..524 | 1345 | 84.7 | Plus |
| CG32588-RA | 677 | CG32588-RA | 88..405 | 15..347 | 460 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16896419..16896613 | 530..336 | 975 | 100 | Minus |
| X | 23542271 | X | 16896689..16896854 | 335..170 | 830 | 100 | Minus |
| X | 23542271 | X | 16896933..16897094 | 170..9 | 810 | 100 | Minus |
| X | 23542271 | X | 15220694..15220850 | 334..178 | 500 | 87.9 | Minus |
| X | 23542271 | X | 15220434..15220622 | 524..336 | 450 | 82.5 | Minus |
| X | 23542271 | X | 15220939..15221091 | 168..16 | 450 | 86.3 | Minus |
| X | 23542271 | X | 15206397..15206549 | 167..15 | 300 | 79.7 | Minus |
| X | 23542271 | X | 15206169..15206278 | 335..226 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:12 has no hits.
UFO08079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:23 Download gff for
UFO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 72..602 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:05:52 Download gff for
UFO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 85..615 | 1..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:33 Download gff for
UFO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 85..615 | 1..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:33 Download gff for
UFO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16896419..16896613 | 336..530 | 100 | <- | Minus |
| X | 16896689..16896853 | 171..335 | 100 | <- | Minus |
| X | 16896933..16897098 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:05:52 Download gff for
UFO08079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16790452..16790646 | 336..530 | 100 | <- | Minus |
| arm_X | 16790722..16790886 | 171..335 | 100 | <- | Minus |
| arm_X | 16790966..16791131 | 1..170 | 97 | | Minus |
