UFO08085.5prime Sequence
1098 bp (1015 high quality bases) assembled on 2011-07-17
> UFO08085.5prime
CAGTCGACATGGTTGATCGTGGAAATAATTTGGTACTCCCAGTGGGCCCA
TGTTCAACGGAACTAACGGAATCTCAAGCGAGTTTTGCTCCACCCAAAAT
TAAGAAAGTGCTCCCCACTAGAGCAAATCGCATGGAACAGTTTCTATGGC
AGGAACTCTTTGCCGAATACAACCGACAGGCCTCCGCCCAAGTGGATTTG
GGTGAGGATCGCACGGAGTACTACGACCAGTTCTGCAAGGATGTGCCACC
GAAAAACGAAGAGACCGAGGAAGTTCTGGTCAACAAGTATCCACTTTACT
GCACTACTGCCGTAACAGTATGGAATCACGAGGGAGATTTCACCAAGACT
TTCAAAAGAAAATATTCTATTACCAGACCTATAGATCTGTGTCCTGATAA
GTTTGCACTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTCACCGTAACACGCACATCTTGCGATATATGTG
TAGAACTGCCGGAATCGTCGTGTATCACTCCAGAGCGATGAAAACGGTTC
AGTTTGCTCATGGAAACGGTGTAACAACGATGACACTATCCATATCACAG
CTCACGTCTTTCATGCAACGAAGTCGGATGACATCATCAGCGCTAGGA
UFO08085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14488-RA | 569 | CG14488-RA | 63..464 | 9..410 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17767270..17767565 | 410..115 | 1480 | 100 | Minus |
| 2R | 25286936 | 2R | 17767619..17767724 | 114..9 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:39 has no hits.
UFO08085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:27 Download gff for
UFO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14488-RA | 30..436 | 1..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:08:57 Download gff for
UFO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14488-RA | 58..464 | 1..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:46 Download gff for
UFO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14488-RA | 58..464 | 1..410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:46 Download gff for
UFO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17767270..17767565 | 115..410 | 100 | <- | Minus |
| 2R | 17767619..17767729 | 1..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:08:57 Download gff for
UFO08085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13654775..13655070 | 115..410 | 100 | <- | Minus |
| arm_2R | 13655124..13655234 | 1..114 | 96 | | Minus |
