UFO08086.5prime Sequence
1108 bp (998 high quality bases) assembled on 2011-07-17
> UFO08086.5prime
CAGTCGACATGTTCAAATACGCTGTCGTCGTTCTCGCTCTCGTTGCCTGC
GCTGCTGCCAAGCCTGGACTCCTGGGTGCTCCCCTTGCTTACACTGCTCC
TCTGGCTTACTCTGCTCCTGCTGCCGTGGTAGCTGCTCCCGCTCCAGTTG
TGACCGCAACCAGTAGCCAGGTTATCGCCAGGAATTACAATGGAATCGCC
TCTGCTCCTGTGATTGCTCCCGTTGCTGCTCCTCTGGCTGCTCCTGTGGT
GGCGAAGTACGCGGCTACTCCTCTGGCTGCTCCTGTGGTGGCGAAGTACG
CGGCTACTCCTCTGGCTGCACGACTGGCCTACTCCTCGCCTTTGGCTTAC
TCCGCACCACTGAGCTACGCTGCTGCTCCTGCACCATTTCTCATCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAATAGGCCAGGT
TTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGG
AAATCGTCGTGTATTCACTCCAGAGCGATGAACGTTTCAGTTGCTCATGG
AACGTGTAACACGGTGACACTATCCATATCACCAGCTCCACGTCTTCATG
CATACGAATCGGATGACATTCATCAGCGGCAGGATGTGAATAAGCCGATA
ACTGGCCT
UFO08086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32213-RB | 526 | CG32213-RB | 51..438 | 8..395 | 1940 | 100 | Plus |
825-Oak-RB | 514 | CG32208-RB | 51..438 | 8..395 | 1910 | 99.5 | Plus |
CG32214-RC | 756 | CG32214-RC | 54..326 | 8..280 | 1335 | 99.3 | Plus |
CG32213-RB | 526 | CG32213-RB | 268..323 | 264..319 | 265 | 98.2 | Plus |
CG32213-RB | 526 | CG32213-RB | 307..362 | 225..280 | 265 | 98.2 | Plus |
825-Oak-RB | 514 | CG32208-RB | 268..323 | 264..319 | 265 | 98.2 | Plus |
825-Oak-RB | 514 | CG32208-RB | 307..362 | 225..280 | 265 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19475961..19476335 | 21..395 | 1875 | 100 | Plus |
3L | 28110227 | 3L | 19471732..19472106 | 395..21 | 1845 | 99.5 | Minus |
3L | 28110227 | 3L | 19467471..19467730 | 21..280 | 1270 | 99.2 | Plus |
3L | 28110227 | 3L | 19472620..19472965 | 31..370 | 1060 | 87.7 | Plus |
3L | 28110227 | 3L | 19475153..19475447 | 319..31 | 745 | 84.4 | Minus |
3L | 28110227 | 3L | 19466728..19466952 | 237..31 | 685 | 88 | Minus |
3L | 28110227 | 3L | 19467675..19467788 | 264..377 | 510 | 96.5 | Plus |
3L | 28110227 | 3L | 19423906..19424044 | 80..218 | 485 | 89.9 | Plus |
3L | 28110227 | 3L | 19478430..19478568 | 80..218 | 485 | 89.9 | Plus |
3L | 28110227 | 3L | 19423106..19423298 | 239..46 | 320 | 78.9 | Minus |
3L | 28110227 | 3L | 19488102..19488245 | 80..232 | 280 | 80.4 | Plus |
3L | 28110227 | 3L | 19488045..19488123 | 41..119 | 275 | 89.9 | Plus |
3L | 28110227 | 3L | 19476165..19476220 | 264..319 | 265 | 98.2 | Plus |
3L | 28110227 | 3L | 19476204..19476259 | 225..280 | 265 | 98.2 | Plus |
3L | 28110227 | 3L | 19424757..19424836 | 133..212 | 265 | 88.8 | Plus |
3L | 28110227 | 3L | 19471808..19471863 | 280..225 | 265 | 98.2 | Minus |
3L | 28110227 | 3L | 19471847..19471902 | 319..264 | 265 | 98.2 | Minus |
3L | 28110227 | 3L | 19423004..19423102 | 370..271 | 255 | 86 | Minus |
3L | 28110227 | 3L | 19475123..19475209 | 310..224 | 255 | 86.2 | Minus |
3L | 28110227 | 3L | 19477672..19477760 | 395..307 | 250 | 85.4 | Minus |
3L | 28110227 | 3L | 19486827..19486933 | 370..263 | 250 | 84.3 | Minus |
3L | 28110227 | 3L | 19472858..19472914 | 224..280 | 240 | 94.7 | Plus |
3L | 28110227 | 3L | 19478373..19478428 | 41..96 | 205 | 91.1 | Plus |
3L | 28110227 | 3L | 19486877..19486968 | 280..189 | 205 | 81.5 | Minus |
3L | 28110227 | 3L | 19423849..19423904 | 41..96 | 190 | 89.3 | Plus |
Blast to na_te.dros performed 2014-11-26 23:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2891 | 151..34 | 151 | 60.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2999 | 250..22 | 143 | 57.1 | Minus |
UFO08086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:28 Download gff for
UFO08086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32213-RB | 48..445 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:09:26 Download gff for
UFO08086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32213-RB | 27..424 | 1..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:47 Download gff for
UFO08086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32213-RB | 48..445 | 1..404 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:47 Download gff for
UFO08086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19471732..19472106 | 21..395 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:09:26 Download gff for
UFO08086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19464832..19465206 | 21..395 | 99 | <- | Minus |