UFO08088.5prime Sequence
1117 bp (997 high quality bases) assembled on 2011-07-17
> UFO08088.5prime
CAGTCGACATGGCGGCTGCCAACATGGAGAAGGGTGAGCTGATGAACCAG
GTGAAACAACAGATCGCATTGGCCAATGCCCAGGAGATGCTCTCGAAGAT
GACGGAGAAGTGCTTCAAGAAGTGCATCCAGAAGCCGGGAAAATCACTGG
ACTCCACCGAGCAGCGTTGCATTTCGCAGTGCATGGATCGCTTCATGGAC
GCCTGGAATCTGGTGTCGCGCACCTATGGCAATCGTCTGCAGCGTGAACA
GTACAGGACCATGGAATCGTTGGAGATGACCAGCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT
GGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAAACGG
TGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATG
CCATACGAAATTCCGGATGAGCATTCATCAGGCGGGCAGATGTGAATAAG
CCGAAAAAACTTGTGCTATTTTTCTTTACGTCTTTAAAAGCGTAATATCA
GCTGACGTCTGTTATAGTACTGAGCACTGACTGAATGCTCAATGTTCTTA
CAAGCATTGGATATCAC
UFO08088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tim13-RA | 442 | CG11611-RA | 86..365 | 5..284 | 1385 | 99.6 | Plus |
| CG34132-RA | 535 | CG34132-RA | 163..346 | 25..208 | 260 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11774137..11774416 | 284..5 | 1385 | 99.6 | Minus |
| 2L | 23513712 | 2L | 7885665..7885781 | 25..141 | 210 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:52 has no hits.
UFO08088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:29 Download gff for
UFO08088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim13-RA | 83..365 | 1..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:10:22 Download gff for
UFO08088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim13-RA | 83..365 | 1..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:50 Download gff for
UFO08088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tim13-RA | 83..365 | 1..284 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:46:50 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 15:10:22 has no hits.
