UFO08089.5prime Sequence
1131 bp (1029 high quality bases) assembled on 2011-07-17
> UFO08089.5prime
CAGTCGACATGAAATATCCCACAATTATTTTATTTGCGCTAGCCGCATTC
ATTTTGCCAACATTTGCCGCAAATGACTACCTGTGGGGTGAAGTTGGTGC
AGATGATTACCAATTGGCAAAGGATACGGTTTCGAAGGCGTTTTTCGTTG
GTCTAGTGCAGACGAAAAAATACGTATTCAAGCAGTCGGACAACCTAAAT
GCGTTGACCATTACGGCAATTAAGATTACCGACAAAAAGAAGAGTCACGG
AGCAACTGCTGTATTGGTCAGTGGAGGTCCTGGATCCAAAGGAGCAACTA
TTAAGTTCACTTCCGAACGAGGTTACGGCATCAAGGATATCGTGGAAATA
TGGGGTCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCCGGAAATCGTCGTGTATTCACTCCAGAGCGATGAAAA
CGTTTCAGTTTGCTCATGAAACGGTGTAACACGGTGAACACTATCCATAT
CACCAGCTCACCGTCTTCATGGCATACGAAATCGATGAGCATTCATCAAG
GCGGCAGAAATGTGAATAAAGCGATAAAACTGGCTATTTTCCTTACGTCT
TAAAAGCCGTAATCAGCGACGGCTGTTAAGG
UFO08089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34026-RB | 747 | CG34026-RB | 27..377 | 9..359 | 1755 | 100 | Plus |
| CG34026-RA | 427 | CG34026-RA | 27..377 | 9..359 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9533844..9534024 | 9..189 | 905 | 100 | Plus |
| X | 23542271 | X | 9534084..9534255 | 188..359 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:34:56 has no hits.
UFO08089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:30 Download gff for
UFO08089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34026-RA | 27..380 | 9..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:10:50 Download gff for
UFO08089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34026-RA | 27..380 | 9..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:51 Download gff for
UFO08089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34026-RA | 27..380 | 9..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:51 Download gff for
UFO08089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9533844..9534023 | 9..188 | 100 | -> | Plus |
| X | 9534085..9534255 | 189..359 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:10:50 Download gff for
UFO08089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9427877..9428056 | 9..188 | 100 | -> | Plus |
| arm_X | 9428118..9428288 | 189..359 | 100 | == | Plus |
