UFO08092.5prime Sequence
1122 bp (1016 high quality bases) assembled on 2011-07-17
> UFO08092.5prime
CAGTCGACATGGCGGACGACAACTGCATTTTCTGCCTAATTTCCGATGGG
CGGATCCCCTCCACTGTTTTGGAAGTCGAAAACGATGACTTTGTCATCTT
CCAGGACATTAAACCCGCTTCCCAGCACCATTACTTAGCAGTGACAAAAA
AGCACTACGCTAGCCTCAAGGATCTTAACAAATCGCACGATTCTTTGGTG
CAGCTCATGGAGAACGCCCTGAAGGATCTTCTGGTGTCCAAGGGAGTTTC
TGTCGATGATGCCCTCTTCGGATTCCATCTGCCGCCGTTTATCACGGTGA
AGCATCTTCACATGCATGCCATTAGCCCACGCACCCAAATGACCTTCCTA
TCTAAGATGATCTTTAGACCCTCCGTTTGGTTCAAAACCGTCGACGAGGC
GCGTATTTACCTTTCCCAAAAAGAAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCT
CATAAACCCTTTAGGGAATAGGCCAGGTTTTCACCGTACACGCACATCTG
CGATATATGTGTAGAAACTGCGGAAATCGTCGTGTATCACTCCAGAGCGA
TGATACGTTTCAGTTTGCTCATGAAACGGTGTACAGTGACCTATCCATAT
CACAGCTCAACGTCCTTCATGCATACGATCGGATGAACATCTCAGCGCAG
ATTAATAGGCGATAAGACTGGC
UFO08092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34015-RA | 594 | CG34015-RA | 82..499 | 8..425 | 2090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16447770..16447963 | 391..198 | 970 | 100 | Minus |
| X | 23542271 | X | 16448031..16448221 | 198..8 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:07 has no hits.
UFO08092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:32 Download gff for
UFO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34015-RA | 78..499 | 1..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:12:15 Download gff for
UFO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34015-RA | 78..499 | 1..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:56 Download gff for
UFO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34015-RA | 78..499 | 1..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:56 Download gff for
UFO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16447663..16447698 | 390..425 | 100 | <- | Minus |
| X | 16447772..16447962 | 199..389 | 100 | <- | Minus |
| X | 16448031..16448224 | 1..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:12:15 Download gff for
UFO08092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16341696..16341731 | 390..425 | 100 | <- | Minus |
| arm_X | 16341805..16341995 | 199..389 | 100 | <- | Minus |
| arm_X | 16342064..16342257 | 1..198 | 97 | | Minus |
