UFO08093.5prime Sequence
1146 bp (1015 high quality bases) assembled on 2011-07-17
> UFO08093.5prime
CAGTCGACATGGCCTTCAAGTTCTTCGCTGTTCTCGCCCTCATCTCGGCC
GCCAGTGCCGGAGTTCTTCCCGTCCAGCAGGTGTATCACGCCGCCCCCGC
CGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTGCCCACGCCCAGCCGG
TTCTGACCAAGGCCACCGAGGAATACGATCCCCATCCCCAGTACAAGTTC
GCCTACGATGTCCAGGACTCCCTTTCCGGAGACTCGAAGAGTCAGGTTGA
GGAGCGTGATGGCGACGTGGTCCATGGCGAGTACTCCCTGATCGATTCCG
ATGGCTACAAGCGCATTGTCCAGTACACCTCCGACCCGGTCAACGGTTTC
AACGCCGTCGTCAACCGCGTTCCCCTGGATCACGTGAAGACCGTGGTGAA
GACCGTGGCTCCTGTGGCCGTGGCTGCTGCCCCTATCCCAGTGGCCTACC
ACCAGCACCACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCAATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAATAGGCCAGGTTTTCACGTACACGCCACATCTGCGAATATATGTGT
AGAACTGCGAAATCGTCTGGTATTCACTCCAGAGGGATGAACGTTCAGTT
TGCTCATGAAACGGTGTTACAGGTGAACACTATCCAATATCCACAGCTCA
CGTCTTCATGGCCATACGAATTCGGGAGTGACCATTCATCAGGGCG
UFO08093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Af-RA | 580 | CG1331-RA | 53..506 | 8..461 | 2270 | 100 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 67..436 | 9..378 | 1205 | 88.4 | Plus |
| Cpr5C-RA | 605 | CG4052-RA | 192..464 | 140..418 | 620 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6689676..6690118 | 461..19 | 2215 | 100 | Minus |
| 3R | 32079331 | 3R | 6692884..6693228 | 34..378 | 1170 | 89.3 | Plus |
| X | 23542271 | X | 5804931..5805203 | 140..418 | 595 | 81.7 | Plus |
| 3R | 32079331 | 3R | 6704277..6704571 | 78..378 | 465 | 77.7 | Plus |
| 3R | 32079331 | 3R | 6702374..6702668 | 378..78 | 420 | 76.7 | Minus |
| 3R | 32079331 | 3R | 6687088..6687275 | 168..355 | 340 | 78.7 | Plus |
| 3R | 32079331 | 3R | 6691265..6691450 | 362..177 | 315 | 78 | Minus |
| 3R | 32079331 | 3R | 6695740..6695935 | 378..183 | 275 | 76 | Minus |
| 3L | 28110227 | 3L | 4215945..4216123 | 177..355 | 250 | 76 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:11 has no hits.
UFO08093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:33 Download gff for
UFO08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 47..506 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:12:45 Download gff for
UFO08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 47..506 | 1..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:58 Download gff for
UFO08093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Af-RA | 47..506 | 1..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:46:58 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 15:12:45 has no hits.
