UFO08094.5prime Sequence
1131 bp (1020 high quality bases) assembled on 2011-07-17
> UFO08094.5prime
CAGTCGACATGAAGCAGTTTCTATTTTGTGTACTAATAATGCTGATCGGC
AAAACTTGCGCATTGATTCCGAGAACCTATGAAACGCGTTTCATTTCGAT
TACCTCAAATGGCACCAACTTGTTCGATTTCAGCCAAATTAGGTTTTTGG
GCCGAGAACGCATGGCAAATGGCACTTTCGAATTGAAGGAGGATCTGGAT
AATGAATCATTTTCAGTCGTCGGTGAAACTTTCATCGATTCTGTGGGCGA
TGGCGAGTATAAGCAGCTTCCGTTTACCGCTCCCAAACAATCCGTCTGCA
CGGCATTGAAGGCCTATTGGTCGTACTTTGAGCCGAGTATAAAGTACGGA
GTTAAGACGGACTTTCCCGCTCATACCCATCCATGTCCCCTACCAAAGGG
AATATACTATATAAAGGATGTAGTTCTCAAAAACGACAATTGGCCAGTCA
TAATGCCGCGAGGTTATCTAAAGGCCGTGGCCAATCTTTTCAAAAATGAC
GAATATGGCGGCAGTCTAGAAATTGTTTCACAAATTAGCGACTTGTCTGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCCGCCAGCGGCATCAGCCACCT
TGTCGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTTGTC
CATATTGGCCCCGTTAAATCAAACTGTGAAACCTCACCCAGGGATTGCCT
GAAACGAAAACATATTCCTCATAACCCTTTAGAATAGCCAGCTTCACCGT
ACCACGGCCCACATCTTGCAATATGTGTAGAACTGCCCGAAATCGTCTGG
ATCCACTCCAGCGATGAACGGTTCCAGTTGC
UFO08094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA84a-RA | 582 | CG33779-RA | 9..548 | 9..548 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8204229..8204717 | 548..60 | 2445 | 100 | Minus |
| 3R | 32079331 | 3R | 8204771..8204822 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:34:26 has no hits.
UFO08094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:25 Download gff for
UFO08094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 1..552 | 3..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:07:32 Download gff for
UFO08094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 1..552 | 3..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:39 Download gff for
UFO08094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 1..552 | 3..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:39 Download gff for
UFO08094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8204229..8204717 | 60..548 | 100 | <- | Minus |
| 3R | 8204772..8204822 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:07:32 Download gff for
UFO08094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4029951..4030439 | 60..548 | 100 | <- | Minus |
| arm_3R | 4030494..4030544 | 9..59 | 100 | | Minus |
