UFO08102.5prime Sequence
1134 bp (1031 high quality bases) assembled on 2011-07-17
> UFO08102.5prime
CAGTCGACATGATTTTGTGTTTACATTTTGCCGGCAAATCGAAAATTGGA
TTTAGAGGCCCTAAATTAACCATGAATCTGTTCGAGGAGCTGGACACCTT
GGACCCCTCCTTCAAACTAGAGCCTCCCCGCATCGAGACGCCCACGGCGC
ACAAGATTACCGTGTTGATATTGCTCAAACAGTATGTGATTAACAAAAAA
AACTGTTTGGATACTGGGATATCCATGCGCACCCAGCGACGGCGCATGTT
CTATATGCTGGTATTCAAGCTCATCCAGGAGCAGGACAAGAGTTACAATG
AGCTACATAGTTTGTTGACCACGGGGAAATACAAACTGGATACTCTGATG
CTGGAATCCTTCGAAAAAGCCATGTCCGAGTTTTGTGCGGGCAGCATTGA
GGCCTTGTTTGACTTCTCGGAGATCCAGAACATCGACGAGATCCTAAACG
AAAACTACGGCATTAGCCAGTTCAGCATGGTGGGCGTTTATGTGCGCAGA
GTGGGCGTGGTGCTAGAGCGCCTCAGTTTCCCTGAGATGATGGATATGTA
CAAGAACGTATGCTCCTACTACGAGAGAGGAGTTCGAGCTGCTGCCTCTG
GTTCAAGAATGGCCGTAGCCGGAGGTATTCTGCACAGGGAGGAGACTCCT
CCTCCGAATCCCATAACAGAAAAGCCTGAGGATCCTAAACCTAAGAAGAA
AGTAGAGGCCGTAGCTCGTATTGCCCAAGAACGTAATCCCCTGAGCAAAT
GGGCGCCAAAACAGGCCAAGTTTTTCATCAACAAACAGTCGGAGCTGTTG
GAGAATAACGAACGTAAGGCTTTGCCTCCTTTGGAACTCCAGAAGAAGGT
GCAGGAGATCATACACGACCTCCCACTAACAACTACACCCTATTTCCTGG
GCTACATGAATCAGTTGAGAGTTAGGGATTACTACAATGCTCTTTCTGCC
TCCACAGAGCATTGGACAGAGTCCCGTGCGCCTGATGAGCCAGAGAGGGC
TACCAGTTTTTTTTGCGTCAATTTGGCGGTACTACTGCCACCTTTTGGTC
ATCGGATGAATGGCTAGCAGCCGCCTCAGAAAGCATATGCTGCCCAGAGA
CACAGGCGAAAAAGGAGCTATCCTTGCAACCTTG
UFO08102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ida-RA | 2408 | CG10850-RA | 14..1129 | 9..1118 | 4945 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3905602..3906485 | 192..1071 | 3815 | 96.7 | Plus |
| 3L | 28110227 | 3L | 3905357..3905539 | 9..191 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:26 has no hits.
UFO08102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:35 Download gff for
UFO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ida-RA | 14..1086 | 9..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:14:50 Download gff for
UFO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ida-RA | 14..1086 | 9..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:04 Download gff for
UFO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ida-RA | 14..1086 | 9..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:04 Download gff for
UFO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3905357..3905539 | 9..191 | 100 | -> | Plus |
| 3L | 3905602..3906491 | 192..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:14:50 Download gff for
UFO08102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3905357..3905539 | 9..191 | 100 | -> | Plus |
| arm_3L | 3905602..3906491 | 192..1079 | 97 | | Plus |
