UFO08104.5prime Sequence
1126 bp (995 high quality bases) assembled on 2011-07-17
> UFO08104.5prime
CAGTCGACATGTCGATTGTCTGCACGCTGGAACAGAAAGTGAACTTTTTC
AAAGCGGCTGCAACGACCAAAAATCTGTTGATACTCAAAAACAATACGGA
TACGAATTACATCAATAACTACAAGCAGGATAATCCCAGCAACAATAAAT
TTCCCCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAACACCAGCAG
CAACTGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAGCAGAAGCT
GAGCGGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGGAGGCAAAG
AGGAGAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATCCGGAGGCG
TCTGTGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAG
CCACAACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAATA
TATCGCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTTG
CATCCGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACAG
CGGCATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAG
ATGGAATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTCG
GCGTTGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGA
ATTCACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGAA
GGAACAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGAC
ATGGTTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGCT
GAATGCCCAGCTGGACGCATACGCGACAAGTTCAACATCTCCGGCGAGAA
TCTGGTGAGCGTGAGAAGATCCTCGCCTCGCTGCCCCACCAGCGACAGTG
CTGAGTAACACAAAGCGCGCAGATGAGCGGCAGTGGTGGCTCCTCCTCGG
CTCCTCGCCCTCGGCAGGTGATCGGGCGAGGGATCGCTTAAGTGGCCACA
ATGCTATCCGGTGAGGATTCTCAAACACTATTTCCACTGATCTACGGGAC
CATGCAATGCGGCGAAGGCCATGTTA
UFO08104.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vri-RF | 4068 | CG14029-RF | 376..1469 | 9..1097 | 5010 | 97.8 | Plus |
| vri-RD | 3455 | CG14029-RD | 376..1469 | 9..1097 | 5010 | 97.8 | Plus |
| vri-RA | 3841 | CG14029-RA | 376..1469 | 9..1097 | 5010 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5308021..5308566 | 499..1037 | 2280 | 97.4 | Plus |
| 2L | 23513712 | 2L | 5307565..5307912 | 151..498 | 1740 | 100 | Plus |
| 2L | 23513712 | 2L | 5306025..5306166 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2543 | 86..233 | 150 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6946 | 191..423 | 128 | 54.9 | Plus |
UFO08104.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:36 Download gff for
UFO08104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RD | 304..1412 | 9..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:15:21 Download gff for
UFO08104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 318..1426 | 9..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:06 Download gff for
UFO08104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vri-RA | 376..1484 | 9..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:06 Download gff for
UFO08104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5306025..5306166 | 9..150 | 100 | -> | Plus |
| 2L | 5307565..5307912 | 151..498 | 100 | -> | Plus |
| 2L | 5308021..5308639 | 499..1110 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:15:21 Download gff for
UFO08104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5306025..5306166 | 9..150 | 100 | -> | Plus |
| arm_2L | 5307565..5307912 | 151..498 | 100 | -> | Plus |
| arm_2L | 5308021..5308639 | 499..1110 | 95 | | Plus |
