UFO08105.5prime Sequence
778 bp (778 high quality bases) assembled on 2011-07-17
> UFO08105.5prime
CAGTCGACATGGCCGTTAGCAATATTGTCTGCGAGTGGCTAAGAGCTTTG
GGCCTGGCCCAATACGCCGAGAGCTTCCTGGACAATGGCTACGACGACCT
GGAGATCTGTAAACAGGTCGGTGATCCCGATCTAGATGCCATCGGCGTCG
AGAATCCTGCCCATAGACACAAGCTGCTCAAGAGCATCCGATCGCTGAGG
GAAAAGGGCGCCGCATCCGTTTACTTTATGCTCAACGATCCCAACTCGCT
CTCGGGCAGCATGGAGATCCTCTGCGAAACACCACCCAACAACGAACTGG
AGCTCGTCCTGCGGGAGCAGCTAGAGACGGACGGAGTCCGGCTGACCGCG
CATCCATACTCAACACCGCCCTCGAGTTGTCTGTCCGACAAGGAGGAGGA
TGAGATTTACGGATTCGGCTATGGCGTCTTCGCACCCCGCGTGGCCAGAG
GAGGGTTAACACAACAGCAACAGCTGCTGCAGCAGCAGACGCTGCAAACG
CAACAGAGCATACAGCAACAGCAGCAGCAGATGCAACAGCAGCAGCAACA
GTTACCAATTGTGCCAGGACAACAGCAGCAAGGACCTCATCAGCATCAGA
CCCTGCCACCGAATGTCGCGCATTTGAACTTTGTGCAGCAAAACTGCCTG
AGTCCGCGCTCAGCTTATTTCTACGAATTTCCACCGACGGCTGAGGGCCG
CGAGACAAGAACGCACCACACTGGCCCCGGCTGCTGAAAAGGCTTTGAAG
ACTGTCAATCGACGGAATCGGAACAATC
UFO08105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SKIP-RI | 5049 | CG31163-RI | 1158..1928 | 7..778 | 3715 | 99.1 | Plus |
| SKIP-RB | 5049 | CG31163-RB | 1158..1928 | 7..778 | 3715 | 99.1 | Plus |
| SKIP-RG | 6489 | CG31163-RG | 1854..2264 | 367..778 | 1915 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22174366..22174727 | 7..368 | 1810 | 100 | Plus |
| 3R | 32079331 | 3R | 22278351..22278626 | 368..643 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 22318569..22318706 | 157..20 | 285 | 80.4 | Minus |
| 3R | 32079331 | 3R | 22278706..22278755 | 644..693 | 235 | 98 | Plus |
| 3R | 32079331 | 3R | 22279228..22279312 | 693..778 | 200 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:34 has no hits.
UFO08105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:37 Download gff for
UFO08105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RG | 1153..1517 | 1..366 | 99 | <- | Plus |
| SKIP-RG | 1853..2264 | 367..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:15:51 Download gff for
UFO08105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1153..1928 | 1..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:08 Download gff for
UFO08105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SKIP-RB | 1153..1928 | 1..778 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:08 Download gff for
UFO08105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22174361..22174727 | 1..368 | 99 | -> | Plus |
| 3R | 22278352..22278626 | 369..643 | 100 | -> | Plus |
| 3R | 22278706..22278755 | 644..693 | 98 | -> | Plus |
| 3R | 22279229..22279312 | 694..778 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:15:51 Download gff for
UFO08105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18000083..18000449 | 1..368 | 99 | -> | Plus |
| arm_3R | 18104074..18104348 | 369..643 | 100 | -> | Plus |
| arm_3R | 18104428..18104477 | 644..693 | 98 | -> | Plus |
| arm_3R | 18104951..18105034 | 694..778 | 93 | | Plus |
