UFO08109.5prime Sequence
1118 bp (895 high quality bases) assembled on 2011-07-17
> UFO08109.5prime
CAGTCGACATGACCAAGAGGGACCTACAGCAGTACTATCGCTACTACAAC
ATGAACAAGAACCGTGGACAATTCAAGAAGGTTGTGATTGTGATCTTCGC
CCTCTGCGTGTTTTCCTACCTATGTGTGGACTACAATCTGAGGACGAAAC
TACTTCGTTTCCGTGATGGATTCGATTTTATGGCCCGCATCGAGGACCAC
TATGGTGGAAATGTGACAACGGCCTATTTCGTTGACACGACGGGCTGCCG
GATGCCACACTTTGAGGTCAGCGACGACACCATTGCCCAGTTCATTTTCA
AGCCACGTCCGTACAGCTGCAACAGAGCTCTGATCCGGACGAGCGACACA
ATTCCCGGACAGCTGCATCTCAATCTGGAGGCCAGTGAGCTGCTCGCATA
CTACAACATCAGTGACCTGTCCTCCGTTAATTGCAACTATACGGAGGTGA
AGCGCAAAACCGATTCTAGTAACACCCACAGTCCGGCAGTGAGTTTTAAG
CTGGACAAAGTTATGAAACTGCCTCTCAGCTCGGAGTTCATTTGCATGTG
GTGCTATGATTCACTGGACAAACTCTTCTACAAGGACTGTCATTTTTTTG
CAGTCGATAAGCCAAGGATTAGGCCCCCACTTAAGACTGGAACCGATAGG
GTGAGCTTCAACAAGAGCAAGGAGGAGCAGGAACGGCTATCCGTAATGAT
ACTCGGCATGGATAGCCTGTCGCATCTAAATTTCCTGCGCCAGATGCGCC
GCACAGCGAACTACGTCCGTAAGCATCTGTCCCACGTGAAATTTTTGGGG
CTACAACAGGTGGGGCGACAATACGTTTCCCCAATCTCGTGCCCCTGCTA
AGTGGCCTGATGATCAGGAACTGAATCTGGGCCTGCACCGCCCAAAGACA
TTGCGATCTATGATAGGTGCTCATTTATTTTGGAACGCTACCAGCCACTT
GGGTTATCGCCTCCATTTTCGCCGAAGATGTGGCAATGCCTCCTCGGCAT
CCATTTACATCAAATGGGTTCGAAAGCCGCCCACGGATTTATTATCTGCG
ACCATGAATTATGGAATGAAGAACTGTGTGGCCCTTCAGAGGACCTCTCA
CATGCCCTTTGTTGCATT
UFO08109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16854-RB | 2755 | CG16854-RB | 461..1513 | 9..1066 | 4700 | 97.3 | Plus |
| CG16854-RD | 3048 | CG16854-RD | 461..1513 | 9..1066 | 4700 | 97.3 | Plus |
| CG16854-RC | 2350 | CG16854-RC | 56..1108 | 9..1066 | 4700 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11088386..11089438 | 9..1066 | 4355 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:41 has no hits.
UFO08109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:38 Download gff for
UFO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RB | 456..1519 | 2..1073 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:16:52 Download gff for
UFO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..1114 | 2..1073 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:11 Download gff for
UFO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16854-RC | 51..1114 | 2..1073 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:11 Download gff for
UFO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11088381..11089368 | 2..998 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:16:52 Download gff for
UFO08109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11088381..11089368 | 2..998 | 97 | <- | Plus |
