UFO08111.5prime Sequence
1125 bp (1028 high quality bases) assembled on 2011-07-17
> UFO08111.5prime
CAGTCGACATGATCACTGCTCGTCTCCTGCTCTCGCTGATGATGCCAGTG
CTGCTGGACGCAGCTGCTCCGCCACGACGGCCGAATGTGGTGATGGTGAT
CTTTGATGATCTGCGTCCAGTTATTGGAGCTTATGGCGATACGCTGGCCA
GCACGCCGTATTTGGATAACTTTGCTAGAGGAAGTCACATCTTTACAAGA
GTTTACAGCCAGCAATCCCTGTGTGCACCCAGCCGGAATTCGCTGCTCAC
GGGTCGAAGACCGGATACTCTGCATCTGTACGATTTCTACAGTTACTGGC
GCACTTTCACCGGAAATTTCACCACTTTGCCGCAGTACTTCAAGGAGCAC
GGATATTACACCTATAGCTGTGGAAAGGTCTTCCATCCTGGCCTCTCATC
CAACAACACGGATGACTATCCCCTTAGTTGGTCGGCTCCAGCATTTCGTC
CCCGAACCGAGCAGTTTATGAACTCGCCAGTGTGTCCCGATAAGGAGGGC
ATTCTGCGGAAGAATCTCATCTGTCCAGTGGAGCTACAAACTCAGCCGTA
CAAAACGCTGCCGGACATCGAGTCCGTGGCGGAGGCATTGCGCTTTGTGG
GCTCACGGAGCAGGCACAGCCAGGAACCATTTTTTCTGGCCATGGGCTTC
CACAAGCCGCACATTAATTTCCGGTTCCCACGGCAATTCCTTTCGAGATT
CAACCTTTCCCAGTTTTACAATTACACGGAGGATAGCCTGAAGCCGCCGG
ATATGCCGGCAGTGGCCTGGAATCCTTACACAGATGTGCGGGCCAGGGAT
GACTTCAAGCACTCCAACATATCCTTTCCCTACGGACCGATATCCCCACT
CCAGGCTGCTCAGATACGACAGAGCTACTACGCCTCGGTGTCCTATGTGG
ATGATCTGTTTGGCAAGTTGATTGGGGGGATTGGATCTGGATGAGACGGT
GGTGGTCGCTCTGGGGGGATCATGGCTGGGTCTCTGGGTGAGCACGCCGA
GTGGGCCCAGTACAGCAACTTCGAGGGTGGCGCTCAAGGTTTCCACTGAT
CATAAGAGGTCCAAGTTCCTGGTCGCCACGAGTACATATCCACGGATCCA
GAAATCCTGAGTTTCCCACTTGTGC
UFO08111.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12014-RA | 1636 | CG12014-RA | 15..1082 | 6..1077 | 5140 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3378549..3379396 | 211..1063 | 3970 | 99.1 | Plus |
| 3L | 28110227 | 3L | 3378282..3378488 | 6..212 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:35:15 has no hits.
UFO08111.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:33 Download gff for
UFO08111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1082 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:13:12 Download gff for
UFO08111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1082 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:00 Download gff for
UFO08111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 10..1082 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:00 Download gff for
UFO08111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3378277..3378488 | 1..212 | 99 | -> | Plus |
| 3L | 3378551..3379411 | 213..1077 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:13:12 Download gff for
UFO08111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3378277..3378488 | 1..212 | 99 | -> | Plus |
| arm_3L | 3378551..3379411 | 213..1077 | 98 | | Plus |
