UFO08112.5prime Sequence
1052 bp (982 high quality bases) assembled on 2011-07-17
> UFO08112.5prime
CAGTCGACATGAAGCTTTTCATTTTGGCTACCTGTCTGCTGGCTTTTGCA
GCCGGTGATGTTTCGCATTTGCCGCTGGAACTCCTGGAGGAGCATCATGA
GCATGGCTATGGCTATGACTACCCCAAGCCGGAGATACCATTTGTGATTA
CCTCGACGACGGAGCCACCACCGCCACCACCGACTTATCTGCCACCCAAA
CCAGTACCCACTTACCTACCTCCTCCTCCGCCCACAACCACAACTACCAC
CACAACCACTCCGGCTCCTACTCCCGCTCCTACCTACCTTCCTCCCCCTC
CACCTACTACCACTACCACGACAACCACTCCCGCTCCCACTCCTGCTCCC
ACTTACCTTCCTCCCCCACCTCCACCACCGCGTACCACTACCACCACCAC
CACTACAACCACAACGACACCTGCACCCACGCCAGTGCCCACGTACCTTC
CACCCCCACCACCACAACCGGAACCGGGTTACCACTACGATGTGCCCGCC
CAAGAGTTCACCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGATGAA
AACGGGGGCGAGAGTTGTCCATATTGCACGTTTAAATCAAACTGTGAACT
CACCCAGGGATGCTGAACGAAAAACATATCTCATAATCCGTTAAGATAGC
AAGCTTTCACGGTACCGCCATCTGCGAATTATGGGTAGACTGCGAAATCG
TC
UFO08112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15023-RD | 819 | CG15023-RD | 186..692 | 9..515 | 2520 | 99.8 | Plus |
| CG15023-RB | 686 | CG15023-RB | 53..559 | 9..515 | 2520 | 99.8 | Plus |
| CG15023-RC | 683 | CG15023-RC | 55..556 | 14..515 | 2495 | 99.8 | Plus |
| CG15023-RD | 819 | CG15023-RD | 390..505 | 281..397 | 230 | 81.4 | Plus |
| CG15023-RB | 686 | CG15023-RB | 257..372 | 281..397 | 230 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4460749..4461253 | 515..11 | 2510 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4460966..4461043 | 367..290 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:19 has no hits.
UFO08112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:34 Download gff for
UFO08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15023-RB | 15..532 | 1..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:13:44 Download gff for
UFO08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15023-RB | 47..564 | 1..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:01 Download gff for
UFO08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15023-RB | 47..564 | 1..521 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:01 Download gff for
UFO08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4460749..4461255 | 8..515 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:13:44 Download gff for
UFO08112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4460749..4461255 | 8..515 | 99 | | Minus |
