UFO08113.5prime Sequence
1049 bp (972 high quality bases) assembled on 2011-07-17
> UFO08113.5prime
CAGTCGACATGAAGCTGCTGATTCTTCTTTTTGTTTTCATCGCTCTTGCA
AGCAATTCTTTGGCTCTGAAAAATGAAATCTGTGGATTACCCGCTGCCGC
TAATGGTAATTGCTTGGCATTGTTTTCTCGCTGGTCTTATGATGCTCAAT
ATAACGTATGCTTTAATTTTATCTACGGCGGATGTCAGGGCAACGAAAAT
TCATTTGAATCCCAGGAAGAGTGTATAAATAAGTGCGTGGAGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
ATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCAT
GGAAAACGGTGTAACAAGGTGAACCACTATCCCATATCACCAGCTCACCG
TTCTTTCATTGCCATACGAAATTCCCGGATGAGCATTCATTCAGGCGGGC
AAGAATGTGAATAAAAGGCCGGAAAAAACTTGTGCTTTATTTTTTCTTTC
GGGCTCTAAAAACGGCCGTAATATCCAGCTTGATCGGTCCTGGTTATAA
UFO08113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp24A4-RC | 653 | CG31779-RC | 41..279 | 4..242 | 1180 | 99.6 | Plus |
| Acp24A4-RB | 342 | CG31779-RB | 25..263 | 4..242 | 1180 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3693558..3693725 | 242..75 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 3693794..3693865 | 75..4 | 345 | 98.6 | Minus |
| 2L | 23513712 | 2L | 3694108..3694275 | 242..75 | 285 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:35:57 has no hits.
UFO08113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:41 Download gff for
UFO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp24A4-RB | 22..266 | 1..246 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:18:50 Download gff for
UFO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp24A4-RB | 22..266 | 1..246 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:17 Download gff for
UFO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp24A4-RB | 22..266 | 1..246 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:17 Download gff for
UFO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3693558..3693724 | 76..242 | 100 | <- | Minus |
| 2L | 3693794..3693868 | 1..75 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:18:50 Download gff for
UFO08113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3693558..3693724 | 76..242 | 100 | <- | Minus |
| arm_2L | 3693794..3693868 | 1..75 | 96 | | Minus |
