UFO08116.5prime Sequence
1124 bp (1024 high quality bases) assembled on 2011-07-17
> UFO08116.5prime
CAGTCGACATGGACACACGCTTGCTGACTGCACTATTGCTGATCGCGGCT
TGCAGGGCCGAGGATCCAGATTTGGGTCAGGATCAGGATCAGGCGAAGAT
CACGTTTAAGCCGGGCCGATATGTGCCACGCCTGCACGGTGCCACGGGTT
GGTATGTTCCGGATGATAGTGGAAAGTACCGGCACGATCCCAGGCCCTAT
GACGGCGGCTATGGAGATCGTGGTGTTCCCTATGACTCCGATTTGAGCGG
CATTTTCCGGAATGCCCAGCGCCAACTGGAGGCAAAGGTCCAGGAGGCCG
GTGAAGGTCTATCCCTCGGTCCACGAGATCATCTGCGATTCATGATCGAC
TTTAATTTCAATGGCACCGGCTGGCAGATAATCCAGTTTCAATGGGTACG
AGATGGCGATGAGTCCCATCCAGACTTTAAGGAGTACAGCTACTTGACGG
AGAACAAGCTATGGGACTCGGATCAGGCCTATGCGTACCAGGAGCCCGAC
GATGGCTGCCATATCAACTGTCAGCCGGAGACGGCGGTATACCCGCTACA
ATCGGAGCCTGTCCAGGAGCCAGTGGTGCAGCCAACTCAGGAGCAGCAAC
AGTCCAGAACAAACATCAATTCAGAGCAGGATCCTGGCAAGATTCATGAT
ACCATCAATGAAGTCCTGGAGTACATACAACAACGAATCCTGCCTACGTT
GCCAATTAAAGGGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AACGCCCGGCGGCAACCGAGCGTTCTGACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATCATAAGCATTCTG
CGACATGGAAGCCATCCCCAACGGCCATGAATGACTGGATCGCCCAGCGG
GCAATCAGCCACTTGGTCGGCCTTGGCGAATATATTGGCCATGGGTGAAC
CGGGGGCAGAAAAGGTGTCCAATT
UFO08116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13155-RA | 751 | CG13155-RA | 1..713 | 4..716 | 3505 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12379798..12380428 | 632..2 | 3095 | 99.4 | Minus |
| 2R | 25286936 | 2R | 12379652..12379735 | 716..633 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:02 has no hits.
UFO08116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:42 Download gff for
UFO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13155-RA | 1..716 | 4..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:19:20 Download gff for
UFO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13155-RA | 1..716 | 4..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:18 Download gff for
UFO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13155-RA | 1..716 | 4..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:18 Download gff for
UFO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12379648..12379735 | 633..720 | 97 | <- | Minus |
| 2R | 12379798..12380428 | 1..632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:19:20 Download gff for
UFO08116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8267153..8267240 | 633..720 | 97 | <- | Minus |
| arm_2R | 8267303..8267933 | 1..632 | 99 | | Minus |
