UFO08118.5prime Sequence
1128 bp (1013 high quality bases) assembled on 2011-07-17
> UFO08118.5prime
CAGTCGACATGTCGAACGGTTTTTCCTTCTGGAACGGACAGCCAGTGAAT
GCGCCTATCTTTCCCCAAATGGGTGATGCCATAAACGTTGGTAGCCAGTG
GTCGTCCAGCGTGGCACCAGGATCCTGTGGACCAAGAACTCGACCGATGC
TGCAGAGCATGGGCGATTTCCAGCCGATGAGATGTCCTCCAGTGCCACCC
AACTTCTTTGGCCAGCCGCACGCCATGGGAACTGGATTTGGAGATGATCA
GGGACCCTGCGAACCCTGCATCGATAATGGAGAAGCCTTCTGCGCCTACA
ACGGCTTGGATATGAGCTGTGCCGGGAGAATTAAGGGCGATTTCTGGGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGC
CGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTG
CTCATGGAAAACGTGTAACAAGGGTGAACACTTTTCCCATATCACAGCTC
ACCGTCTTTCATTGCCAACGAATTCCGGATGAACATTCATCAGCGGGCAG
AAAGGTGGATAAAGCGAAAAACCTGGGCCTTTTTTTTCTTACGGGCTTAA
GGCGGTAAATACCAGCCTGAACAGCCTG
UFO08118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15200-RA | 546 | CG15200-RA | 125..464 | 8..347 | 1700 | 100 | Plus |
| CG1394-RB | 868 | CG1394-RB | 572..628 | 261..317 | 210 | 91.2 | Plus |
| CG1394-RA | 842 | CG1394-RA | 572..628 | 261..317 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11183055..11183394 | 8..347 | 1700 | 100 | Plus |
| X | 23542271 | X | 11170051..11170107 | 317..261 | 210 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:36:05 has no hits.
UFO08118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:41:42 Download gff for
UFO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15200-RA | 121..464 | 1..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:19:51 Download gff for
UFO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15200-RA | 121..464 | 1..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:19 Download gff for
UFO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15200-RA | 121..464 | 1..347 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:19 Download gff for
UFO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11183051..11183394 | 1..347 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:19:51 Download gff for
UFO08118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11077084..11077427 | 1..347 | 99 | == | Plus |
